Array 1 2581-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBC01000002.1 Salmonella enterica subsp. enterica serovar Ealing strain 06-0782 NODE_2_length_442586_cov_4.35203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2580 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGATATGATGGTC 2519 29 100.0 32 ............................. CTCTATCCGAACACTGCGGACGTGCAGCAGGC 2458 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 2397 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGAGCCCATGAGGT 2336 29 100.0 32 ............................. AAAATGATCGGCTTAACGCTGTGATTCTTTAC 2275 29 100.0 32 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGA 2214 29 100.0 32 ............................. TTTTTTTCGACGTCCCGGAGAGTTATTTGCGG 2153 29 100.0 32 ............................. CGACGCTGGAGACCTCATATCAGTCAATAAAT 2092 29 100.0 32 ............................. CATCCAAAAACCCCTGGGACGGGCAAACGGGA 2031 29 100.0 32 ............................. ACTATAGCGCGCTCTCTGCCCTCGATCCTGTA 1970 29 100.0 32 ............................. GATTATATTCAATTTCATGCGGTGATGATTGT 1909 29 100.0 32 ............................. GATTTCGGAAAGAGCAACCCGCTGGCAGATGA 1848 29 100.0 32 ............................. CCCATTATTGTGCTGCCGCCATCAGGTTCTGC 1787 29 100.0 32 ............................. ATTTTTACATAACGCCCTGATGCCATGTTCTG 1726 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1665 29 100.0 32 ............................. GCCGTATCTAAATAATATGTGCTAATTGGTGC 1604 29 100.0 32 ............................. CGGAGTGAGAGCGCTAACCTTTCTGACTGCCC 1543 29 100.0 32 ............................. ATTTGGCGTGAGAGTGTTACGCCCGAACTGGT 1482 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCGATG 1421 29 100.0 32 ............................. AATAGCGAAACCGTGCCAGCTTTAAACTACAG 1360 29 100.0 32 ............................. AGCGGGAGACCTTGATTGTCCAGACGTTGGGG 1299 29 100.0 32 ............................. CCTGCGCATTCTTTTACAGTCAGCCAGATATC 1238 29 100.0 32 ............................. CAACCATCACAGGGTTAACTGCGGGCGTTGGT 1177 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 1116 29 100.0 33 ............................. CGTTCGCGTGCTTGAGGCGCTCACCCAATGCGC 1054 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACGCTGACACCA 993 29 100.0 32 ............................. TACCATCCTCATATCGTTTTTGAGTTATATCG 932 29 100.0 32 ............................. AAGAAAATCTTTAACTATGTGCTGATGAACAG 871 29 100.0 32 ............................. GCACCGGGCAACGCGCGCCATGGTCCCGCACA 810 29 100.0 32 ............................. ACAGAGACGCGCCCACCGTTCAGCCCTGGAAA 749 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 688 29 100.0 32 ............................. AATGGAGCCGTGCCGGACGAGTTGTGGATGGC 627 29 100.0 32 ............................. ATATGCTGAGAATTCTTTTGGCTTCAAATAAA 566 29 100.0 32 ............................. GGGCGATAACAGAATGGAATTAACAAAAGAGC 505 29 100.0 32 ............................. TAGGCGTCACAACCTGCTCCGCGTCGTTAACG 444 29 100.0 32 ............................. GTTTTTCTCTTGAGCCAGGATTCGCTTGCTTG 383 29 100.0 32 ............................. TGTCCGATCTTTATGATGAAGAAAAGACGCTA 322 29 100.0 32 ............................. CCAACATACTCCTTCGGCGGCGTGTCGATACC 261 29 96.6 32 .....T....................... TCGGCCCTCAGGATATTGAAGGCCGGACACAT 200 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAGATC 139 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTCCACCGGGAAAATAGTCCAAATGGCTAACGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20929-19252 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBC01000002.1 Salmonella enterica subsp. enterica serovar Ealing strain 06-0782 NODE_2_length_442586_cov_4.35203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20928 29 100.0 32 ............................. CGCACGTTGAGAGCGGAATGCCGATTCCTCCG 20867 29 100.0 32 ............................. CAAATGCATAGCAAATGCATAGCATAAACATA 20806 29 100.0 32 ............................. GTCCTGGCATTCGGTATCCCCGGCGAATTTTA 20745 29 100.0 32 ............................. GAAATCGCCACGGTGATTCCGTCTAACAGCCG 20684 29 100.0 32 ............................. CGAGTACTATCCAAGTCCTGTATGGACCGCAA 20623 29 100.0 32 ............................. GGATCAAGAATGCTGATATTGTTGATGCTCTA 20562 29 100.0 32 ............................. CTGAAGGTTTACGGGCCGGAATTACCGCGACC 20501 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 20440 29 100.0 33 ............................. GAGGCCCAATACTACACGCAATTAAGGCTACGC 20378 29 100.0 32 ............................. TGGCTGAACAAACGCACCGGCGAATACGAGTC 20317 29 100.0 32 ............................. CCGTACCATTGCCCAGCTCCTGCAGGATGGTG 20256 29 100.0 32 ............................. GTTTATGCCAGCGGCAGTACAGGGACGATCAC 20195 29 100.0 32 ............................. TCGAACTGGTAACGCAGCCCTGTACGATGTGC 20134 29 100.0 32 ............................. CATATTATCCAGGCTGAATCCACTTAAATTTG 20073 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 20012 29 100.0 32 ............................. AGCAGGGGGTTATTCAATACAGCCCTTGACGT 19951 29 100.0 32 ............................. GAGTGTTAGGGAACCTGGTTGATGTGTCAAAC 19890 29 100.0 33 ............................. CCGATCAGCCTGATGACCGATTTAATTAAACCC 19828 29 100.0 32 ............................. CTCGTCGTCTTTTTTTTCGCTCATTTTTTCGG 19767 29 100.0 32 ............................. TTCCCATTGTTTTTTTTGCCCATGTTAGCGCA 19706 29 100.0 32 ............................. ATCAGGTTTTGGGGCTGGCTCCGTAGGTGTTT 19645 29 100.0 32 ............................. GGACTACCCGCAGATAAGTTCAGCGAACGTGC 19584 29 100.0 32 ............................. CCTCCCGGGAGACGGTCAGTCGGGCGCTGTTA 19523 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 19462 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 19401 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 19340 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 19279 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATACCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBC01000016.1 Salmonella enterica subsp. enterica serovar Ealing strain 06-0782 NODE_16_length_106486_cov_4.14753, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 116 29 100.0 32 ............................. GAAAGAGAACTTTGCGAATCAGGTCAATGCCC 177 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 238 29 100.0 32 ............................. CCAGTGCTGTTATCTTCTACCTCTCCCACCCA 299 29 100.0 32 ............................. GAGTGATATCACAATTTAATTTTTATTTTGTA 360 29 100.0 32 ............................. TGGTTTACGAAGGGCGGCAAGGGCGTCGAACC 421 29 100.0 32 ............................. GCGGTAAAAATCACGGTCGGCATACATCGTGG 482 29 100.0 32 ............................. TTCAGCCACAGGCTTGGTTCGTGGCGGCGTTC 543 29 100.0 32 ............................. TCCCACGCGTCGTCGTCAAACTGCGATTTCGG 604 29 100.0 32 ............................. AAAAAGCTGAACGCGAAAGCAAAAAGTAACTC 665 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 726 29 100.0 32 ............................. GTTCCAGGTAGATACCGATCCCCTGGCGAATC 787 29 100.0 32 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACG 848 29 100.0 33 ............................. GTTCGCTTCATACGCCTCCGCATCGAAATTTGC 910 29 100.0 0 ............................. | A [937] ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCGCCAGCGGGGATAAACCGTCCACCGGGAAAATAGTCCAAATGGCTAACGCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //