Array 1 18236-16749 **** Predicted by CRISPRDetect 2.4 *** >NZ_APTE01000113.1 Neisseria meningitidis NM607 gnm607.contig.112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18235 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18169 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18103 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18037 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17971 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17905 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17839 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17773 36 97.2 30 .....................C.............. CCAAATAGAAATACATACGCCGAGTAATTA 17707 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17641 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17575 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17509 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17443 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17377 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17311 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17245 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17180 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17114 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17048 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16982 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16916 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16850 36 100.0 30 .................................... ATGCAATAAAAGCCATCGACTGCCCAAAAT 16784 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //