Array 1 109965-110513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOAB010000001.1 Streptomyces sp. RCPT1-4 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 109965 37 78.4 38 ....T.A..A........A..AA.TT........... GACTCGATGAGTTGGCGCGGCATCGCGCTCGACCCTAA 110040 37 86.5 35 G........A..T.C..A................... ATGGTCAAGAAGGCCGAATTCGGAACTGCTCCCGG 110112 37 83.8 35 ...A.T.G........A..AA................ GCCGCGACCACCGAGGCGTGGCAGCGCTGGGCCCG 110184 37 97.3 36 .................A................... ACCAGCGGCGAGATGCGGGCCTCGGCCAGGGGGTTG 110257 37 97.3 38 ....................T................ GCCACCGGCTTGGAGATTCCGGCAGAGATCCTCCTCGG 110332 37 83.8 35 ..........T....A.A........GA...T..... TGCTCGACGCGACTCCTCGTCGCGGCCGGAGGGGC 110404 37 100.0 37 ..................................... GCCGAACTGGGCACCGGCGACGAAGCCTTCATCCCGC 110478 36 70.3 0 G....T.C.....-..C...T.A.T.TT......G.. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 87.2 36 ATGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Left flank : TACCGCCTCCAAGCAGGACAACACTCCAAGGACCCCAACGGAGCCACCGGAGAAGTCATCGAAGCGCTGCGAGCAAAGCTGCACTACCCGGAGGTCGCACACAGAATGCGGATGATCGACAACGAACACTCCGTGGCCGTAGTCGTCATCCGCCCCCACCTCGAAGAAGAAGCCCGACAGGCCGCCCAGAAGGCAGTCGACCAGCTCCGCTGCGGCCTGCCGACGCCGGCGACCTACCGCGTCCTGCAGGAACACATGGCATCCATTCCCAAACGGGAACTGGAACTGGCGATCAACACCGGCCACACCATCGCAATCGCCGGTGACCTGCAACAGTGGGTTGGCTCCTACCACTACCAACGAGGCATCGAACCCCCTGCATGACCATTCAGACCACCGAGTAGCATCTCAACCAATGCGCTTGCGGCGCTGTGATCGTTTCTCATGCGTCCAACGATCGCAATCGCTCGATGGTCTGGAGCAATCGGCCGCAGAGCAGG # Right flank : CCGCGCCGCGCACACGCAGATGCCCAGCAATCGTCTCGACTACCCTCCGCAATATCTACGGGGCGCCTCCCAGCCTGTGCATTACGCTACTAGATCCCCAGTCGCGGTCTTCCGCTGGGGAGAATCTGGGGAGTACGAGCGGCTCTGGGGAGGATCGGCCGCACAAAGCAAGACGGCTCCTAAAAGATGCCGAAAGGTTCATCTGCGCAGATCAGGGATGATGCTGACCCCATCGCCGCAGGTCAAGGCACCTCAGTAGACAACTTCATGACGGTCTCTTCGCTTCCTGGGGGTCCGCAGAGCCCGGCCCGCATCAGATGCGTGCTCTTCCGCACCTCCGAGCTGCGCCCACTCCTGACCAAGAATCCGGACCATACGCGGATCAGACACCGCCATCGTCCCAGCCGCACCTTCGTCCGGTCGATCCCATCACCGTCCGTTACGCCGTTCCGGTCCGTAGGAGCTCCATCCCTTGAGGTACGGCTTGAGCTCCTCCGGCG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73332-74338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOAB010000018.1 Streptomyces sp. RCPT1-4 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 73332 29 96.6 32 ...A......................... CCCGAGGGCCTGTTCGGTCGACTGCTCGCCGG 73393 29 96.6 32 ......................G...... AGCAGCGAGAGTTCCTCGTTGGAAAAGGTGAG 73454 29 100.0 32 ............................. TCGGCGTCCACCGTGCTCGACTTGAACCGGAC 73515 29 100.0 32 ............................. GCTCCTCCGGGCTGACTCGGCCTCAGCCCACG 73576 29 96.6 34 ............................A TGACGCCGTCCAGGATGTCCGGCGCGACCGCCCG 73639 29 100.0 32 ............................. TCCGCGATCATCAGCTTGCGGTACCGGCCGAC 73700 29 100.0 32 ............................. TCTGCGGCCACTCGGCCCAGTTCCAGCGGGTG 73761 29 96.6 32 ........................T.... TCGCCGAGGACACGGAGGCTGACGTGCCACCG 73822 29 100.0 32 ............................. CCGATGGCCAGCCAGAGGAGCTTGCCGAGGTC 73883 29 100.0 32 ............................. GCGTACTGGGGCATGTCGAGGCCCTTGGCGCC 73944 29 93.1 32 ..........T..............C... TTCACCCACAGCTCCAGGTTCTCCAAACGGTT 74005 29 96.6 32 .....................A....... CCCGAAGCGCTCGCGTTCATGCTGACCTTGCA 74066 29 96.6 32 ...A......................... GACCGCATCTCGGTGCAGATGAAGCGGCTGAA 74127 29 96.6 32 ........T.................... TTCGAGTGGCCGCACGAGGGCACCCCGCACCC 74188 29 100.0 32 ............................. ATCAGGTCCTGCGTGTTGGTGTCGGCGGGGCA 74249 29 96.6 32 ..............C.............. ACTGCCCGCCTGCGCGTCACGTGGCGCGACGC 74310 29 86.2 0 .....................C..C..TT | ========== ====== ====== ====== ============================= ================================== ================== 17 29 97.2 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGCCGCACCGGCCGCCGGCGATCTTCTGCTCCACCGACGACCAGGCGATCGGCCTGCTGCGGGCCGCGCGCGAGCTGCGCATCGACGTGCCGGGCGAGCTGGCGGTGGCCGGGTTCGACGACATCAAGGAGGCGGCACTGGCGGACCCGCCGCTGACGACGGTCGCCTCCGACCGCTCCGCGATGGCCCGCTCCGCGGTGGACCTCGTCCTGGACGACGGCCTACGCATCGCGGGCTCGCGGCGCGAACGCCTGAAGGTGTTTCCGTCGCGGCTGGTGGTGCGGAGGTCTTGCGGGTGCGCTTGATCCCGCCGGGGCGGGGGGTGTGTGGGGGTGCGTGTAGGGGTTGTTTCGGGCACGGTTAGTTCTTCTGAGATGGGCGGAACGGCTTCGGGTGGTGGGTGCGCCGAGGTAACGGAAGGCGGTGCGGATATGGGCCGGCGTCTTGGTAAAGCGGGTAAAATCGACCTCTCCGCATAACATAACCGCAGGTCAGCTCCT # Right flank : TCCGGCCGTCCCGTAGGGGCGCTGGGGGGCTTTATATCGGGCATACGCGGTTCTGTCGGGCTTCTCAGGGGGGCCTCAGGAAGCTCTCATGATCCCGGGTCACTCTCAATGACATGACCGAGAGCATCCGCCGCAGCGGCGAGTACGAGTACCCCCAGGGTGACGGGCAGGACCCGTTCGCGTACCGGCAGCAGCACGCCTCCACCCCCGTGGACCCGGAGTGGCCGCCCCCGCCGGCGTACCCTCCGGCGCAGCCCCCGGCCACCGCGCCGACGGCCGCGTACGGCCACAGTGGTCACGGCGGGGGTTACGACGGTGGCGGTTACGGCGGCGGCGGTCACGGCGGTGGCGGTTTCGATGGCGGCACCGCTCTTCTGCCGGGCGCACCGGTCGGCGGCACCGCTCCCGCTGCGCGGAAGCGTGCCAAGGGGCCGCTCGCGCTGCTCGCCGCCGTGGCGATCGCGGCGGCGGCCGTCGGCGGCGGCACCGCGTTCGCCTTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94935-96058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOAB010000002.1 Streptomyces sp. RCPT1-4 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94935 29 96.6 32 ....C........................ GCCTCCGTGGTGGCCCCGTCGAGTCGAAGACC 94996 29 96.6 32 ....C........................ CGGGTTATCGCGGGTCCGACGGTCTGAAGGTG 95057 29 96.6 32 ....C........................ ACCATGGGCGACTTCCTGCGGACTCACGACCG 95118 29 96.6 32 ....C........................ AAGGAGCTGCGCGAGGAACTCGCCGCCGAGTC 95179 29 100.0 32 ............................. AAGTACGGCACGCATTTCACGTGGCAACAGAT 95240 29 100.0 32 ............................. GCCACCGACAGCGTGCGCGTCATGAACGCGAT 95301 29 100.0 32 ............................. ATCAGCTTCGAGGATGTCGCCGGGTCCATGGC 95362 29 100.0 32 ............................. TGGAAACCGGTGGTAGCGGGGGCCGCCGTGCA 95423 29 100.0 32 ............................. GCCGCTACCGGATTCGATGCCGAGTGGATGAC 95484 29 100.0 32 ............................. ATGCTCGCCGACACCGGCATCGACGGCCCGGT 95545 29 96.6 32 .........A................... CCGCTGACGAATGCACGCCTCGGCGGCCCGGT 95606 29 100.0 32 ............................. TCCACGACAGGCTGGTACCACGCCGGGATGGC 95667 29 100.0 32 ............................. AGGACGGGTTCGAGGACTCGGTCATCGCGGAC 95728 29 96.6 32 .......T..................... CAGCTCGGAGAGATCGCCACCAAGGTCAAGGA 95789 29 100.0 32 ............................. ATCCAGGCCACGACCGAGGGCCGCACCGTGCG 95850 29 100.0 32 ............................. TACCGCGCCCAGCGGCACGTGTTCGAGGAGAA 95911 29 93.1 29 ....C.......................T CCGACGTCGCCCTCGCCGTCCACGTCAGT 95969 29 93.1 32 .CG.......................... GTCCGGCCCTCCGGCCGCTTGCCATTCGCGGA 96030 29 89.7 0 ...............A........T..T. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.7 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : GCTCGACGCGCTCCGCCGCTGGTTCGAGGAGGTGGCCCGCTACGGGAAACTCAAGCACGGCGTATCGGAGGTCATCCACGCGGCGACCAACGGCGGACTCGACGACAAGAACTACCAGCCGTTCCTGGGCGCCATCGCCGCCCTGCTCGACGCCGGCGTCGCGACCGGGGAACTGAAACCGGGCACCGACCCCGAGGACGTGCTCCTCCAGCTCAGCGTCCTGTGGCGGATTCCACCGGGCGAGGGCGCCGAGGCCCGCGCCGACCGCATCCTGGAACTCATCCTCGACGGCCTGCGCACCCGGCCCCAGGCCCCGGCGCCTGACCCCGCGCCAGACCTGCAGGATGATCTGCCCACCCCCTCCGGCCGGAGTGGAACGGCAACGAGGACACCCTCTCCGGCCTGAGCCGAAGGGGGTGTCGAGAGGACGAGCCGGGCTGTACGTTGCAGCACTAAATGAAATCACCCACACCGTCGGGTAAAGTCCCAGCTCAACAAGC # Right flank : GCTCCTGGAGGAGGCGGTGTGGATCGCAGATCGAGTCAGTTCCGACCTGGGTCGGGGCTGTGGGTTGCTGGCGTCGCGTATTTCGGGGCCGCGAAGCTCCTCTGGGCGTGAAGAGAGGAGTGTTTTTGCAGGTGAAGGACTGTTGTCAGTGGTGGCCTCTATGCTCCGGTGCTCAGTTGTGGTTGAGCGAGTGGGGGCGGGGTGGACGTTCGGGAACTGAGCGCTCGGTACGAGCCGTTGGTCGTGCGGGCGTTGGAGACGTTGTGGGGGAAGTCGCGGGAGCGGGCTGGAGGCAGTACCCATCTTCTTCTGGCGCATCTCTTGGACACGGCAGCGGTCGCGGAGTTGCTGTGGGACGGCTTTCTCGCGCGTTCGACGCGGTCGGCGCTTGACACGGTCGCGGGTGGGGCGGGGCGGGGACGGCGGTTGTTCGTCTGGTTGTGCGGGGTGCACGACTGCGGCAAGGCGACGCCGGTGCATCAGCGTCTGTGGCCGGAAGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : GTCGCCCCCGCGCCCGCGGGGATGCTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106023-106356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOAB010000002.1 Streptomyces sp. RCPT1-4 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106023 29 96.6 32 ............................A CCCGAGCCCGCGGTGAGGGTGTCTCGGTCCGG 106084 29 100.0 32 ............................. CCGCCGCCGAGCGCACCCCGGACACCCCGCCC 106145 29 100.0 32 ............................. CGCATCCTCACCTTCCCGCCGCCGCCGGTGCT 106206 29 96.6 32 ............................T CTGTTGCCTGGGGCAACCAATCGGCCAGGATT 106267 29 100.0 32 ............................. TGCTGCGGCCCCTCGGTGCTGTCGTAGGCCGG 106328 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTCGCCCCCGCGCCCGCGGGGATGCTCCG # Left flank : ACCCCACAAGGCACGGACTTCGACGACTCCGAGTCCAACCACCTGTGGGACGAACACCTCGGCACCGTCCCGGGCGGCACCAACTACGGCCACGCGGACCTGTCGGCTCACGGAATGACCGACAGCCACATCGCGGTCATCGGCCCCGACATCAACGACACCGACCCCACACCATGACCGTCATCATCCTCGTCGCCGCCCCAGAGGGTCTCCGCGGGCACCTCACCCGGTGGATGGTCGAGGCAAGCGCCGGCGTGTTCGTCGGCAACCCCAGCCGCCGCATCCGAGACCGACTCTGGGAACTCCTGGCCACCCGCATCGGCGACGGCCAGGCCATCCTCATCGAACCAGCGGCCAACGAACAGGGGTGGGCCGTCCGCACCGCGGGCCGCGACCGCTGGCAACCGGTCGACTTCGACGGCCTGATCCTCTCGGCCCGCCCCAAAAAACAACCAAACGAAAACAGCCACCCCACCCGATAAAACCCCAGCCCAACAAGC # Right flank : GGTCCGCATCGTCGATACGGGCCCGCAGAGCCCTGAAGTCCTCGTAGGGCTGCTCGCGCGACTCAGCCCCCGGCGGATGGCTGCCGCCCTGGTCGTCCGGATGTATGAGAAGTCGCGTGAGCTGATCAAGAACTCTTCCACGACGCGCGACGTGGCAGGCGATGGCGGCGGTGATGCGATGGCCGTGCTCAGACACGCCCTCTCGCTCACTGGCGAACAGTCCCAGGGGGCCGGAACCCACTCCGATCGGTGGCGGCGAAGAGCCTCCAGGATGGCCGTCCTGGAGGCTTTCGTGTCTGGCTCCGGCGGAGGCAGGCAGCCCATCGCGGTCCGTCCGGGGAGGCCGGGAAGGAGCCCGAGTCGTCGACCTGCCCGGCTCCGGCCTTCCCGGGTCGCTCAGGGGGGAGAAACCGACGGGGGTGCCTCTGGTTGCCTCTGAGTGACCCAGGTCGATCCGGGAGCGAATCAGCGCGATCTCCTCTGACTGCCTCCGATCGCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //