Array 1 824211-824604 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000003.1 Streptomyces tsukubensis strain VKM Ac-2618D c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 824211 29 100.0 32 ............................. ATCGTTGGCGAGTACGTGTTCGACCTCGTGGG 824272 29 100.0 32 ............................. CGGCACCCCCCTGCGGGAGGTTGCTCTATGTG 824333 29 100.0 32 ............................. CGTCACCATGTCCGTAGGAGACCACGGCGCCG 824394 29 100.0 32 ............................. GCTATGCGCCTGTACCCGCGGTTCTTGATGAG 824455 29 96.6 32 ..............C.............. GGCACCACGGAGATGCAGGGGATCCTCACGAC 824516 29 86.2 32 ............TAC.........A.... GAGATCGCCGGACGGTACGGGCCGGAGAGTCT 824577 28 89.7 0 .............AC..........-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : AGCGCTGGGGCTGCCGTCTGGAGTCCTATCTCACCGACCCCCGGGTGGAACCGGATATGAACAAGTGGCAGATCCAACTCGCCTTCCGCCTCGCCGACTGACCCCGGCACCCGGCCCGATCTCTTGGCCTCCGGCACGGGTCGGGGTCGGGGGCGAGGTCCGGCGTCCGGCGTCCGGCGTCCGGCGTCCGGGAGAACGCGAAGGACCCCCGTCCAGTCACTGGACGGGGGTCCTTCTTCACGTGGCGGCGCCAGGATTCGAACCTGGGTAGGCTAAGCCGACGGATTTACAGACCTCTGGCGCCTGCACTCGCAAGGCTCCCTTGAGCAGGCACTTTCCCGGGCACCCGGTGCTCCGGTTCCTGCTCCGTCCACACGTCGTCCTGATCATGCTCTCGGTCGCGCTCTGGACCGCAGGCTTCACGAGAGGGAGAAATGTCCGTTCTTGGCAAAGTGGGTAAAATCCAGGGTCGCGCCAACTAACGTCCCTGGTCAGCTCCT # Right flank : CGCACGCTTGCTCCCAGCACCAAGTCACCCAGGGACGATCCGGCTCGTGAAACCATCACCACGCAGCCGCTCGTACGCCTGCATCACGATGTCAGGCACTTCCTGCCTGATCATGAACCCCTGATCGGGGTAGATCAGCAACCTCTGAAGGGCTCCCACGAGCATGTCGATAACCAGGCGCTCATCCCCGATGGAGGCAAGGTAGTCCTCGAAGACCATCGGCGCGGACGCGCTGACGACGTCCACCTCGGGCCAGAGCTGGCGCGCCGTGGCATACGCGCGCCGCTCTTCGTACGGCTTGCTGACCAGCAGCACGGATGACACGTCAACACCGTTGTCTTCCAGCAAAGCCTTTGAGAATCGGATGTTCTCTCCAGAGTTGCGCGCCCGTGGTTCGACCAGCACGGAGGAGTCGGGCACACCAAGCTCAAGAGCGCGGTCTCGGTAGTGGACAGCTTCGCCCCGCGGCATACGCGCCGCCGTGGTGGGGCTGGTTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1175214-1175486 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000001.1 Streptomyces tsukubensis strain VKM Ac-2618D c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1175214 29 100.0 32 ............................. GAGGTGGAGCTCTGGGCGCTGGCGCACGCTGG 1175275 29 100.0 32 ............................. CCGCCGAGCCGCGGGTAGCGGCGGCTGACCGA 1175336 29 100.0 32 ............................. CGGCGCACGTCAGACAGGGAGTAGTGGGGTCC 1175397 29 100.0 32 ............................. AGGACCGTGTGTCATGGTCGGTCGCCTTCGGA 1175458 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTCCCCGGTCGAGCGTCTGGGAGGTCTCCGCGGTCACGAGGCCCTCTCCTTCGGAGTGAGTGACGGCGAAGCCCCACGGTTGACGCGGCGCCGTCCCGCCGGCGACGCACCGAGGACCCGCCGGCAGGCCATGGCACACCGGATGGGCTCCGCGGCTTCGCTGCCACGGGGCGCAAGATTGGTGAGCGGGACAGTAGCGACCAGGTTCGCTCAGCGGAAGACCTCGTCCAGAATCCGGTCGGGGGTATACCAACGCGGCCCGTTTGATGGCTGTTTGCCGAGCCTTCACCACGACCCCCCGGAGACTCCCCTTCCGCATCGGCGGGCCCATTTCGGCGGTGGGGGGAGGGGCCGGTCAGTAGGGTCGGGGTGTGGTGGAGCGGAGGGGGGAGTCGAGGTGTGTCGACCGGTATGCGTTGCGATGGTTTGGCACGTTTCGCCGGAGTCGGTGAAGTTGCTTCAGAACGGCGCGGGCGGGTGAGAAAGCGGCAGGTCGGAGA # Right flank : CGCCACGCCCACACCCATCGCCGTCCCGCCGCCAACGGAGGCGGCATCGGCCTCTCCCCCTGGGATGAGCCGTCCGGCGTGAGCTGTACTGATAGCCCTGGAGATACGAACCGCAACCGCAACCGCAAGCCGAGTCCGCCTCCCTGTTCAGCCGTTCCCATCTCAGGAGATCGGTTCCACGCCGTACAGTCGGACGCGTGCACTCAGCGGTGAACAGAGCCCACGCCGGGCTGGTTACGGTTACCGGAAGTTCGGGCCAAGTAGGAGCGGCCCTGGCTGAGGCACTGGACACGGCCGGCTGGGTGGTCCGCGGCGTGGACCGGATTCCCGGCCGCTGGACGAGCGTCGTCGGAGACCTGCGAAACCAGCCGGTGCGACTGGCCGCATTGCAGTCGGCCGATGCCCTGGTCCATAGTGCCGCGCTGCACGCCCCACATGTCGGCCGCCTGGCCGATGAAGAGTTCCGAGCCGTGAACGTAGATGCGACCGCGGGCCTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1178619-1179562 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000001.1 Streptomyces tsukubensis strain VKM Ac-2618D c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1178619 29 100.0 32 ............................. ACCGAGCAGAGGTACCCGGCTCACAAGGTCGT 1178680 29 100.0 32 ............................. CGGCCTGTCATGTCCCGGAGGCGGCCGTCCGC 1178741 29 100.0 32 ............................. GGTGGTGGTCGAACTGGAGCGAATGCGTGGGA 1178802 29 100.0 32 ............................. TCGCCCTCGAATTCCTCCAGGACGTCGCTGCC 1178863 29 100.0 32 ............................. CCCGTCTACACCGTCGTCGTTCTCGCCCTGGC 1178924 29 100.0 32 ............................. AACTCTGACGACTCGACCACGAAGAAGACCGC 1178985 29 100.0 32 ............................. ATCACCTATTGGGCGTTGTCGATCCGGTACCT 1179046 29 100.0 32 ............................. CGGAAACGGGTGTGCTGGGTCGGGCCCTCCGC 1179107 29 100.0 32 ............................. TGGGCAATCCACTGCGGGTGCTCCGCCCATTC 1179168 29 100.0 32 ............................. GATCTGGACCGGCTCCCGCTGGGAGAGGGAGG 1179229 29 100.0 32 ............................. CACCAATGGGTGGTGGCGGGCGGGGTGTCGGG 1179290 29 100.0 32 ............................. CCGCGGTTGTCACCGCTCGGCCCCGCTCATCT 1179351 29 100.0 32 ............................. TGCATCGGCTGGGCGTCGACCTCGGCCCAGGT 1179412 29 100.0 32 ............................. GACCTTGAGGAGTACGGCGCCCTCGTCCGCAA 1179473 29 96.6 32 ...................A......... GGCGGACGCGGGTCATCAGGGTCAAGGCTCAT 1179534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCGCCAGGGCGCCCGAGTCAAGGAGCTTGCGATACACCTCGTCCCGCGCGGAACCGTCCAGGCCGGAGGCAGTCACTTCCGATGCTTGCCGTCCCCTTCGGGAGCGCTTCCATCGGGGCTGGGCGGCTCCTGTGGCGGGGTCCACGGCTGGCCCGGGAGGTTTTCACCAGCGCCGCCGCCTTCTCCGCCGCCCCCGTCGCCCGCGTTGCGTGTGATCGGCTCGGCCATCGCGACCTCCAAGGCTGGCCGTAGGTAGTCAGCCTGGACTCTAGGGAAGTAGAGAGCATGCGAACAGCCCGAATTGGGCCGTTTGACGGATTCCCTCGGATGGGTGAGGAGGAACCGATATCGTCGGTGGCCGGAGCCGAGGGAGGGGGTTTGGTTTGCTGCACGATCCAGACCAACCAGAGCGGTTTTCGTCGTTTTCGACAGATTTGCCGGAGTCGGCAAAGTTGCGTGAGAACTGGTTCCCCGGCCGATGAAGCAGCAGGTCAGGAAGT # Right flank : CGTCAACGCGACCTCGGCCGCGTGCGGGTAGCCGAAACACCCATCGGCGCATCGGCAGAACCGGAAATGCTCGGCGCTTCTCTGGCCGCACTGCTGCCCACTCGATTCTTGACAAGATCCGGTTCCGCCCCGGCGTCCAGATACGCGCTCTCACATGTACGACCTCGCCTGCGAGCCAGCCGTCGTTAGGCTCCACCCATGACCGACTACGTACAGGTTTCAACTGCAACACCCCTACGGGAACAGGCCGTCGAGCTTGCTCAAGGCGCGATCAAAGGACGTCTAGCAGCCGGCACCCAGGTCATTGGGCCTGTCGGCTCCGTGTTCTGGCACCTGGGGGAGTTTGGCGAAGGTACCGAATGGCGGCTTCTGCTCACCACGACGACGGACAGGTACCCCCAGCTTGAGCAGTACCTGTTGGAACACCACCCTTGGGACAACCCGGAGCTGCTCGCCACACCGATCGTCCGAGGTGCGCAACGGTGTTTGGAGTGGATTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106266-105694 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000006.1 Streptomyces tsukubensis strain VKM Ac-2618D c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 106265 30 100.0 31 .............................. CCGGACGTGCGTCTCGTACTTGGCGTACGTC 106204 30 96.7 31 .............................A TGACCATCGACCCCGACACCATCCCCGCCAC 106143 28 93.3 31 ...........--................. TCCGGACCTCGTCGAGGTCCCAAGGGTTCCG 106084 28 90.0 31 ...........--................T TCGACGGCAAGGCCGCCCGGGACGGGATGCT 106025 30 96.7 31 .............A................ ACGTCCGGAAGGAGCTCGTGGACGTCGCCGT 105964 30 96.7 31 .....G........................ GGCGGTGTCTCACCGGGCGCCGATGCCGCGG 105903 30 76.7 31 ......G....CCC.......C...C...T GGATGCCGCTCCTGGTCGGGACGCCCGCCCA 105842 30 86.7 31 T..........CCC................ ACATTGCGGCACTCCGGGGCGCACGGCTCGT 105781 29 86.7 31 ...T........C-...............C GCGCACCTCTGCCGTTCGGTCACGGGGCTTG 105721 28 83.3 0 ...........CC-.......C...-.... | ========== ====== ====== ====== ============================== =============================== ================== 10 30 90.7 31 GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Left flank : CCTTGCCGATGTCGTGTACGGCGGCCAGCCAGACGGTCAGCAGCCGGGCGTCGTCCGCGCCGCCGGGCAGGGCGTCACCGACCAGTTTCCGGACGTTGGCGGGCAGCCAGTGGTCCCAGAGCAGCCCGGCGACGGCGGCGCTGTCGGCCATGTGCCGCCAGAGCGGCAGCCAGCCTTCGGTGTCCCGATCGTGCTTCGCCCATACGGACCGCACCGGTCCGGTAAGGCGCTCCCCAAGACCCATGCGTGTCTTTCCCGTTGAGTGCTGTGCGAGTGCTCAGGGAGATACCTACCGTCAAAGCGGTGGCCATGGCAGCAGATCGGAAAAGATGAGCGCGTTTGTGGCTGATCCGCTGGAATCGGGGAATGGAGACGCGCGCCACGTCTAGGATGCGAGCCCGCGCTGCCGGGTGGGTGGGGGTGTCTGGGTGGAGATGTCGGGTGCGGTGAAGTTGATGGGAAGTGGGTGGGGCGGGGGGTAAGGGCGCAGGTCAGGGAGT # Right flank : CTCGGGACGATCGGCGCCGGCACCCGGCGTCACCGCTCCCCGCCCCCCGCGGGGCTCCCGCCCCGGAGGCGGTCGATCAGGGGTGAACTCCCCCTCCCCGTACGGCCGTACGGGCTCCGCCCGGCTCCTCCTGCGCCACGGACCCCGATTCGTGCGCCGACGGCTTCGGGGGCCTAAGCTCTGCCGTGTGCTCGACGTGAGGCGTATGTGGGTGCTCTGCGCTGTGGTCGCAGGAGGATCGGTCACCGCGGCGGCCGCCCGGCTGGGGTACACGCCGTCCGCCGTCAGCCAGCAGGTGGCGGCGCTGGAGCGGCAGACCGGGACGGCCCTGCTGGAGCGGGTCGGACGTGGGGTGCGGCCCACCGCCGCCGGGCGGTTGCTCGCCGAGCACGCCGTGCTCATCGGGCGGCAGATCGCCGAGGCGGAGACCGCGCTCGCAGATCTGTGCGCCGGACGGACCGGACGGCTCGTCGTGCGGTACGCGCCCGGTTCCGGCGCCG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 164196-163315 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000006.1 Streptomyces tsukubensis strain VKM Ac-2618D c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164195 29 100.0 32 ............................. CATTCGAGAAACGGCGGCGCCCCCTTCCCCTT 164134 29 100.0 32 ............................. GGAGTCGAGAGCGCGCCCATGCCCATCGGTGT 164073 29 100.0 32 ............................. AGTCCCGCCCGGCGTCGGCCGGGCGGGACCTG 164012 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 163951 29 100.0 32 ............................. CAGTTGATGGAGCAGTACGACGGGGTGGCGAA 163890 29 100.0 32 ............................. CCGCCGTAGTCCTTCGCGTTCAGCGACCGGGG 163829 29 100.0 32 ............................. GGGGCGACCCGCGACCAAGGCACCCTGGCCAA 163768 29 100.0 32 ............................. CGCTCCATCGACGCCAGCGGCGACGAAGTCGG 163707 29 100.0 32 ............................. CCTCGTTGAGCCCTCAGCCGTCGAGCCGGAGA 163646 29 100.0 32 ............................. GGCGGCGCCGGAGCGGAGGCGGCGCCAGGCGG 163585 29 100.0 32 ............................. ACTGCCGAGGAGGCACCGGATGAGCGCCACGC 163524 29 100.0 32 ............................. CGGCCAAGTTCAGGCCCGCAACGAACCTCCCT 163463 29 100.0 32 ............................. CACGGCTCGCCGTCGACGGACGCGACCCGGAC 163402 29 96.6 32 ...........C................. TGGCCCACCCCGGCCTCTTCAGCGGCCACGGC 163341 27 86.2 0 ...........--.........C.T.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCCCGCGAACGTCCTGACTGCGGACGGAACCTTCTGCGGCGTGATCGACTTCGGTGACCTCTGTGCGGGCGACCCGGCCGGGGATCTTGCCGCAGCGTGGATCCTGCTCCCGGATGATGCCTTCGACCGCTTCCATGCTGCCTACCGGCCCACCCTGGACGCGGCGACCCTGCGACGTGCCCGTGGTTGCGCGGTGATGCGTGCCCTCTCCGGCATCCTCATCGGAGACGCCGGCGTCCACGGCCGTCCCGGCGGCAAGGCCACGTGGGGCCCGCCTGCCCGCACCTCTCTGGAGCGCCTCCTCGCGACGGCCCACCGCTGAGAAGTGTGGGTGCGCAGGTACCGCAGCGGAGATAGGAGAATGCGGGGCTTTGTATGATCGGCGCGGTCCGCTGAAGGGGAAGGGAAGTTGCTGATGCGCTCTATGTCGCCTATGCCGGAGTCGGTGAAGTTGCATCAGGAGCGCGTTGAGCGCTGACAAAGGACCAGTTCAGCGAGT # Right flank : ACCCCATGCCATGGAACCCCGGGCGATTCCAAAGACGTCGACGCCGTGGCCCCTCAGACGGCCACGAGCCCGCAGACCGCATAATCGAACTCCCATTCCTCACCCCCTCCACAGTTCACCTCGGGTGCGCGCCCACCGCCATCCGTTCCGTTATTCTGGGCCCGCCGCGGTGGCCATCATCCGCACCCGCTCAAGTAAATCGCTCAAGTAAACGAAAATATGATTTTGGGCCGTCAATTCCTGAGGGGCGACTTGCTACCCGACCACCACCTGCCCCGCCCCGACGGTCACGGCGTCCGCCTGCCCCTGTCGTCAAGCCAGCGCGAGATCTGGTTCGCCCAGCTCAGGAACGGGAACAGCGCCGCCTACCGGATCGGCGAGTATCTCGAAATCCACGGGCCCGTACAGGCGCGGTTACTGGACGCCGCGCTCCGCAGAGCCGTAGCGGAATCCGAACCGCTCAATGTTCGATTCGGGACCGAAGCCGGGGTGCCGTGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 167309-165570 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000006.1 Streptomyces tsukubensis strain VKM Ac-2618D c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 167308 29 100.0 32 ............................. TCCGGTGATCCGCATGACTGGCGGTCTGGCCG 167247 29 100.0 32 ............................. CGGCCTGCGTCACACAAAACCGCAGGTCAAAG 167186 29 100.0 33 ............................. CAGCGGGAGAAGGGAGGGGACTCGATGTGCTTG 167124 29 100.0 32 ............................. CTGGCCGAGCAGCCCGCCCCGGCGCCGGTCTG 167063 29 100.0 32 ............................. CCGGCCCTGACCGCTGAGCAGGCCCCCGGGAT 167002 29 100.0 32 ............................. CCCGCCGACCTCCCCGCCTCCTGGTCCGGCGA 166941 29 100.0 32 ............................. GAGTGGCTCCAGCTCCACACCGCCGAAGTCCT 166880 29 100.0 32 ............................. CCGAGGTCCGCCAGGCGGCTCTTGCTGCCGCC 166819 29 100.0 32 ............................. GCCCAGCGCGGGGCCGTCTTCGGGACGACCGG 166758 29 96.6 32 ............................T CCGAGTAGTGGTCGGGGTCGATCGTCACAATC 166697 29 100.0 32 ............................. CGGCCGGAGCCCAGCCGGTCGTCGGACGGTCG 166636 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 166575 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 166514 29 100.0 32 ............................. GCTGGATGGCGCCGCATCGGCGGTGCCCTGCG 166453 29 100.0 32 ............................. GGCCGCCCCCTCGACTCCCGCGGTCTGTCCAA 166392 29 100.0 33 ............................. GACGATGTTCGAAGCCGGGGACGAAGTAGAGAT 166330 29 100.0 32 ............................. GGTGTTGACGTTGGTCGACTGGCGAAGGCTCC 166269 29 100.0 32 ............................. TGCCCACACTTGAGGTAAGCAAGCTCGTGGGG 166208 29 100.0 32 ............................. TACGTACGCGACGGCGGCCGGGGCGGCTGGCG 166147 29 100.0 32 ............................. CGTGCGGGGGATGTCCGACCCCGGGCGTACGG 166086 29 100.0 32 ............................. CATCCCCGCTTCCGCCACCGAGACGACGCAGG 166025 29 100.0 32 ............................. GTAGCCGTCCATGTAGCCGGGCATGCCCGTGC 165964 29 100.0 32 ............................. GGCGGTCAGGTGCGGTCGGGGAATCCGATGCT 165903 29 100.0 32 ............................. CGGCCCCCGGCCTTCCGGCCTCGGAGCCGTCC 165842 29 100.0 32 ............................. GTGAACGCCGCCGTCTGGCCGTCGTTCTCCAG 165781 29 100.0 32 ............................. GCGGTGTTCACGTCGATCCCGACCACGAACCG 165720 29 100.0 32 ............................. CCGAGCTTCAGCCTCTTCATACGGCCCGAGCT 165659 29 100.0 32 ............................. AAGTCCTCGCCGCCCGCGAAGAAGCCGTCCGC 165598 29 86.2 0 .....................GA..G..T | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGGGAGTCCCCGGAGGAGGCGGCGGTCCGGGAGACCCGGGAGGAAGCCGGCCTGACGGTCACCGGCCGGGCACGGATCGGATCCCGTACCCACCCCCTGACCGGCCGCCACATTCTCTACATCGCCTGCACCACCGCATCCGGCACCGCCCATGTCACCGCGCCACGGGAGATCACCCACACCCGGTGGATCCCACCCCAACTGCTCGATACCTATGCCCCCGGTACGTACGAACCAGTCCGCCACCACCTCGGACTCCACACCTGACGAACGGACACCCCACACCCCGCTATGGGCCTCTGTCTGGCCGTGCATCTCGGGTGGTTCAGTGAGGAAGGGTGTGCGAGGGAGGAGTGGTGCGCGGCGGGCCTTTGTATGATCGGCGCGTTCCGCTGAAGGGGGAGCAGGACTTGGAGCCGTGCCCTATGTCGCTTATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCTTTGAGCGCTGACAAAGTGCCAGGTCAGGAAGT # Right flank : GCTGTTCATCCTCGGCGCCAACGCGCTGTGGTCACGCGCAGGCAAAGACACCGCGCCCGACGCCTGGCGGCGTGGGGTCGCCTTCATACTCGATGGCCTGCGGGCTGGCTCGGCCCACCCGCTTCCCGTTGCTCCGCTGACGCCGCAACAGCTCTACGAGATCATGGGCGGCATCATCGGCACACGGCCAGGCACCGGCCAGTAGGGGCGTGCCCGTCAGGCCGCGAACTCTCGGTCTCGTTGGTTGGCGGCCCGATGCCCCTACTAGGCTCGGCCTGCATGACTCACACCGAGATGACGATCACCGCCGAGCTGATTCGGGACCTCCTGCGCGACCAGCACCCCGACCTGGCCGAACGGCCTATCGAGCTCGGCGCGCGCGGCTGGGACAACCAACTCTGGCGGCTCGGCGACGACCTCGCCGTACGGCTGCCCTGGGCGACCGAGTCCGCGGACGGACTTTTGCGCAAGGAACACACCTGGTTGCCCGCACTCGCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 172601-171781 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000006.1 Streptomyces tsukubensis strain VKM Ac-2618D c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172600 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 172539 29 100.0 32 ............................. TTCGGCCGTAAAGGGCATTTGTTCCTGACGTC 172478 29 100.0 32 ............................. ACGGTGGTGGCCTCCCGGCCGGGCGGCGCGAC 172417 29 100.0 32 ............................. AGCGGGACCAGCCTCCGAGATGCCGTGGACCG 172356 29 100.0 32 ............................. CGGCCCCGGGCGAACCCCGGCGTCGCGGTGGG 172295 29 96.6 32 .................C........... CCGGTCGCGCCGGGGAGACTCGTCGGGGTGCT 172234 29 100.0 32 ............................. CGGCCGCGCCGGAGGGCGCGGCATTTGGCGCT 172173 29 100.0 32 ............................. CTGGGCGGCGACCGGCTGACCGCCGGGACGCA 172112 29 100.0 32 ............................. AAGTTGACCGAGTGCGTCATGATGGAGGCATG 172051 29 96.6 32 ............G................ CAGATGCCCCGCCCGGCCCCGGAGGCCGAGGT 171990 29 82.8 28 .........A...A.......TC.C.... ACTCCCGTCCCAGCCGGGAGACGAACTT 171933 29 82.8 32 .C.......A.G.A..........T.... GAGGGTCGCCTCCCCACGCCCACCATGGCGGT 171872 29 75.9 32 ...T............T.......CCAGG CCGGACGAGCCCAGCGCCACCACGGCCACCAA 171811 29 82.8 0 ...T.T.......A.......T.A..... | AC [171786] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.1 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGTACAGCGAAGACGCCTACGGCTACACGTGGCTGCTGCTGCGCCGCGCCCCGGATGACGTGGCGTCCCTGGTGAACGACCTCCATGCGGTGAACACCCTGCTGGAGGAGTCGGGCTTCGGCCCCCACCTGCTGTGCTCCCTGATCACGTTCCACACCCCGGAAGCCCGCGCGCTGGCGCTGGTGTACCTGTACAAGAGGGGCACGTTCTACCCGTTCGCCCCGATCCCGGGCGGCGGTGAACGAAGGGACAACGCGCTGGAGTTGGAGGTGAGGTCGCTGCTGTCGGAGGATTTGAGGATGGAGGGGGAGCTGAACAGATGGTTTCCGGTGTGGGGGGCGCCGGGGTTGGAGGGGTGAGGGGTGTGGGGGTTTGTATGATCGGCGCGTTCTGGAGGAGGGGGAGCAGGACTTGGAGGCGTGCCCTATGTCGCTGATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCCTTGAGCGCTGACAAAGTGCCAGGTCGGGAAG # Right flank : CGGCAGGAGTTCCGTCCTGCTCCTGCATCACTACCCGGGACCGAAGTCATCCCTGTACTCACGCGGGGATCTCCCGGGTACCGTTCGTAAGGGACGATTGAGAATCAGGAGACTGGTATGGCGCGTTGGAGTGATTACACCACCGGTCAGCGCATCAAGATCCTCCGAGGAAAGACCCTCCGGCAAACCGACCTTGCCGAGTTGACGGGGCTGTCGCTCCCCACGGTGCAGCAGGCAGAACAAGACAAGCGACTAACTCTGCAGACTCTCCTCCTGATCGCCAACGCCCTGGGTACGGATACCTCGGTACTGCTCGGCCAGCAGGGCCCTCGCAGGGGAATGGAGCAGGATGATCGTGCAACGGTCAAAGCCCTCGCACGTGCGGTGCACGACACTTCCGCTGGCCTTTTCCCCGACAACGTCACGGCACCACCGCTCCCCGGACTCGCAGAGACCGCGAAGCAGTGCTGGGATCTCTATTGGGACGGAAAGTACGTGGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 180739-180329 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000006.1 Streptomyces tsukubensis strain VKM Ac-2618D c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 180738 28 100.0 33 ............................ CAACGCCACCGCGGCCATTACTGCGTACCTGGC 180677 28 100.0 49 ............................ CTGCGGACCTGCGGACCTGCGGACCTGCGGATCCAGCGGCTCGTCTCCT 180600 28 100.0 33 ............................ ACGGTGTGATGGACCATCACTCCGTGCACCGGG 180539 28 100.0 33 ............................ CCGCGGGCGACCCGCCGCCCGAGGCCGGGACGC 180478 28 96.4 33 ...........A................ TCGCACTCAGCCTGAGGCGGGGAGGCCGGAAGC 180417 28 92.9 33 ...........AC............... CGATTCAAGGGCGGGCAGGTCGATGTCGCCCCA 180356 28 92.9 0 ...........A........A....... | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 97.5 36 GTGCTCCCCGCGGGCGCGGGGATGGTCC # Left flank : CCAGCGCGCCCGATTCCACGACGAGATCGACGATCCGCCGCCCGGAGAACGTCTCGCGAACCCCCTCCGCCCCCGCCAGCGCGACGGCCTGCCCGCCCCCACCGGCAACGGCGGCGAGAACGAGGGAACCCCGCAGCAGGAGCCGCCGCCCGGGATCCGACGGAAGGAGAGTCATGAGGCCACCTCGTCTCGGCCGCCCGGGGAATCCCGGGCACCTTCGGTTCACTGCCGAGTGTGGTGCTGCGGGGGGAGCACGGGGATCCGTCACACCCCTGACCGCCCCCGGAGTTCACCCCCTGAGGGGCATCGGGGGAGATGAAGCCGCGGAGGTACGGAACGCTCCGCCCGGCAGGGGAGGCCCTCGTATGATCGCCGGGGTGGGGCGCGGCCGGGAGGAGGGGGACTTGGGCAAGCTGATGTACCTTCAGCCAGTTTTGCCGGAGTCGGTGAAGTTGTATGGGAGGGGCGCTGAGCGCTGCCAAAGGGGCAGGTCAGGGAGT # Right flank : CCAGTTCGACCTGGTGCGCGGCCTGACCGACTAGTACTCCCTGCTACCCGCAGGGATCCCCGCGCCGCCCCCACAACCCCCACCCCCAAGCGGTAGCGTCTCCGTGCCGCCCACGGCCACCTGGGCGGCGCGCGTGTGTTCAATCCGCCGTGATCCCCCCGTGCAGGAGACCCCGTGGACCGAGTCAGAACCCGACGCACGCCCCTCCTGATCGCCACCCTCGCCACCCTCTCCGCCCTCACCGCCGGGACCTTGTCCCCGGCCACCGCCGCCCCGGCCCCGCCCGCGCCCACCACCGAGGCCCTGCGGCCCGTCTCGCCCCCGCCCGCGAGCAACTCCGTCTCGACCGCGCCCGTCACCGCCGACGGCGACGGCATCGAGACCGCGCGCACCTCCCGGCCCGTCGCACCCGGCATGACCCTCACCTCCTACGACCGCCTCGAAGCCGACAAATGGCTCCGCGTCGACACCCTCTCCGTCGAACTCGACGGCCACGGCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 241656-237749 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGFG01000009.1 Streptomyces tsukubensis strain VKM Ac-2618D c9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 241655 28 100.0 33 ............................ GCCAACGCGATGGTCTCGTGGCTGAAGGGCCTG 241594 28 100.0 33 ............................ TCTGGGCAGTTTTTGATGTGCGGATGGTGGGCG 241533 28 100.0 33 ............................ ACGAGGCCGTCACCCTCAGCCTGGCCTACGACG 241472 28 100.0 33 ............................ TCGAAGGCGGCGTTCATCGCCACGAGCGGCGCG 241411 28 100.0 33 ............................ AGGGCGTGGATCCGGGCGTCGAGCCCTTCGGCG 241350 28 100.0 33 ............................ GCGGCGCACTCGGGCTGTACGGGGCAGGTGCGG 241289 28 100.0 33 ............................ TACGCGGCGAGCCCTTCGGCCTGCTCGCGAGCG 241228 28 100.0 33 ............................ GTGACGTGGATGTACACCCACCGTGGCGAGGCG 241167 28 100.0 33 ............................ TCGACGGCCAGACCGCCAGTCATGCGGATCACG 241106 28 100.0 33 ............................ CAGCCTGTGCCAGGCGGTGAGGGTGATCTCGCG 241045 28 100.0 33 ............................ CCAGGTGTCGAGCGCGAACCGTTCGACAGTGAG 240984 28 100.0 33 ............................ ACACCGGCGCCGAAGTCCACAGTCACCACCACG 240923 28 100.0 33 ............................ GTCGAGGCGGGCCAGGGCCGCCTCGGCGATGCG 240862 28 100.0 33 ............................ ACGGGCGGGAGCCCTCGGCAACCACCGGCCGCG 240801 28 100.0 33 ............................ ACCGCATCCGCGCCGCGTCGGCCCGCGCCCTTG 240740 28 100.0 33 ............................ ACGGAGACACCGCATGACCAGCACCATGGAATG 240679 28 100.0 33 ............................ TCGAGTGGACCATCGCCCGGGCCGCACAGATGG 240618 28 100.0 33 ............................ GCACGTGGCACGGCGGTGAAGGACGGGTGGGAG 240557 28 100.0 33 ............................ AGGCCGAGGTACTCGGCCCGGGCGGCGATGATG 240496 28 100.0 33 ............................ TCCGCCGCGTTCTCCGGGGGCAGCGGGGCCCGG 240435 28 100.0 33 ............................ CCGCCCGCCGAGCCCGTGTCGGCGGCGGACCCG 240374 28 100.0 33 ............................ GCCTTGTGGATGTGCTCACGGATCCGGCCCTCG 240313 28 100.0 33 ............................ GTGCACTACCTGGGCACCGAATACCGCAGCCGG 240252 28 100.0 33 ............................ GCACTGCGCACTGCTGAGTCGGCCAAGCAGCCG 240191 28 100.0 33 ............................ ACACAGGGCGAGCTGGCGCTCTACCCGCCGGAG 240130 28 96.4 33 ........................C... GCGCCGCAGGAGGGGCAGGGTGCGGCGGCGGGG 240069 28 100.0 33 ............................ TCGAACGCCGGCCTTCGTGCTGTCCCCCTGACG 240008 28 100.0 33 ............................ AACCCGGCCTGCTCCGCCCAGACCAGGGGCCAG 239947 28 100.0 33 ............................ CGGGTGCGGTCCCGGGGCATGGGTGCTCCGGGG 239886 28 100.0 33 ............................ ACTTTCGGGCCGGTCGTCGTTAACTACGGCCCG 239825 28 100.0 33 ............................ GAGCCTCCCATGGTCGAGATCTACGACAACAAG 239764 28 100.0 33 ............................ CCCTTGAAACCGCAGACCCCGACCGGCCCCGCG 239703 28 100.0 33 ............................ GGCTGATGGAGCTTTCCCACCCCCAGGCGCTGG 239642 28 100.0 33 ............................ CACAGCTACCAGGACTAACACACGCACAGGGCG 239581 28 100.0 33 ............................ TTGGCTCCAAGGGAGTGCCCAGGGGGGAACGAG 239520 28 100.0 33 ............................ TCCCGCCGCCGACTGGACCAGTACGTGGAGCAG 239459 28 100.0 32 ............................ ACCTGCCGGTCGGCCGAGCCGAGGGCCCTGGC 239399 28 100.0 32 ............................ GTGCGCTCCGCTGTGCTGGTTGCGCGCTGCGA 239339 28 100.0 32 ............................ GTTATGGATGTCAGCAGGAACCGCCACCGGAG 239279 28 100.0 32 ............................ CTCGATGGTGATGTACGTGTGGTCGACCCATC 239219 28 100.0 32 ............................ CCCTCTCAAAGCGGGACATCCGCCGGGCCGCG 239159 28 100.0 32 ............................ GAGCCCGCACCAGTGACCGACCCTACCCCCGC 239099 28 100.0 32 ............................ CAGCAGTCCGGAGAGCGCCGCGCTCGGGGTGG 239039 28 100.0 32 ............................ CAGCCGCAGGCCTTGTTCCGCATGCTCCCGTT 238979 28 100.0 32 ............................ CCCGCCTACGAGTTCGGGACGGCGGCGCACAC 238919 28 100.0 32 ............................ GACAGGGGGGACAAGGTCGATGAGCTTGCTGC 238859 28 96.4 32 .................A.......... CGCAGAACCATGACCGGGGGATGGTCCAGCGC 238799 28 100.0 32 ............................ GCTGGAAGGTGACCGATCTGCGGGCGCGCCTG 238739 28 100.0 32 ............................ GTGCGGCTCGATGAGGCCAACGTCCGCACCGA 238679 28 100.0 32 ............................ TCGACGTTGACGACGACAAGGTGACCCGCGTG 238619 28 96.4 32 .............A.............. TCCTCACCGCCGATGGTGATCTCCCCCGGGGT 238559 28 100.0 32 ............................ GGGTCCGGTACGCCGATGGTCTGGCCGGGGAC 238499 28 100.0 32 ............................ GCGGCGGTGAGGGCCCGTACGGTGCCCTCATG G [238483] 238438 28 100.0 32 ............................ ACCCTCGCCCGTATCCAGGCCGGGCTCGACAA 238378 28 96.4 33 ...........................A GGCTGTCGACCGTGAGAACCTCGACGTGCTCTG 238317 28 100.0 32 ............................ CCATTCAGGCACTGCCCGAAACGGGGTCGTCA 238257 28 100.0 32 ............................ AGTTCCGCCGGTGGACACCGGAGGAGGTCGTC 238197 28 100.0 33 ............................ TGGTCGGCGATCTCGTCGGAGATGGCGGCTTCC 238136 28 100.0 32 ............................ AGAGACTCCGAGCCCATGAACATGCTCGTGCC 238076 28 100.0 32 ............................ CACTGCTGGCCGAGAGGGAGGGTTCATGACCG 238016 28 96.4 32 ....................T....... GTTCCGGCGATCAGACCCATGGCCGACGCTTC 237956 28 100.0 32 ............................ GCGGGAACCAGTGAGCAAGAAACCCGGCGGGA 237896 28 100.0 32 ............................ CTGGGCACGTCGCCGCGGGACAACGCCGCCGC 237836 28 100.0 32 ............................ CAGGTGGCCGACTTCCAGGCCACGACCGCGAA 237776 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 65 28 99.7 33 GTCCTCCCCACCGCGTGGGGGTGTTCCG # Left flank : AAACCCCGATACCTTCCCGATATCGTGCAGCCCGGCGCACAAGCCGACCAGGCTCCGCGCCCGCTCCGGCTCACCGGCCAGACCCAAGCCCCGCTCAATAGTCCTTCGCTGGCCGTCCGACAAGTAGACATCCCACAAATGCAGCGCCATGGCAGCGGCGTCAGCCAAGTGCCTGACAAGCGGGTATGGAGGCAGCCCCGGATCCAGCCCTCGCGACTTCGCCCAAATCGACTCATCCGCCACAGCCCTGGGCACACCCATTCCCGCACAACCCCTCACGCGATCGCCAGCCAATGAGTCAAGCAGACCGCACCGACAACGGGCCCCATCCACACCACAGACCGAAGCATTCCGCCCCTCACAGCACCCGCCATCACAACCACCAGCCCCCGCGATACCCCACGGGATCCGCAGCTACAGTGAGGAAACTGCATCCGGGAGGCACAATGCGATCAGCAAAGGCAAAGCAAAGCCACTCCTAACGTGCAGGTCAGAAAGGG # Right flank : TTTTCCTGCTGCTCTCCTCACCGCGTACGGACACGGACCAGCCCACACCGCACCCCCATCCTCTGCATAGAGCCAAGAGAGTGACGACGGGCAGCGGGATTCCCCTGGGACTTATCTGGGACTTCCGGCTGCATCAACGGCCATGACCATGAAACAACCGAAAGAACATTTGTGCAGGTCAGCTGCGCGGTACCAGCAAACACGGCAGGTCACAGACCTGACTGGTCTCTTCCGCGACAACTGATCAGGACGATCCGGCTCGGTGCACTACTCCTTGTCGCACCACCACCGCAGGAAGGGACGCAACCGCCTACGGCACTGAGGGAATGACGGCTACAGGCGCCCTTCACGCAGAGTGAAGACCCGGCTCGAACGACGGCCGGCACCGAACCCCGGCGCTCGCCTGAGCCCTCTTGCGCTTGACGCTCATATGACGCTCGTGACCCAGAATCCGCCGCAACCGCGCTCACCAAATAGCCTCTGACCTGCACTTATCTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //