Array 1 268403-267943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIK01000004.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NRRL B-1477 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 268402 33 93.9 28 ..............................C.T AGTGCGCGGCTCGGTGCCGGTCATGGTC 268341 33 90.9 27 .............................TCA. GGGGATACCGGCCCAGCCGGAGAGGAA G [268313] 268280 33 100.0 28 ................................. TACGTCGAAATTCCGGGGTCGCATGCCC 268219 33 90.9 28 .............................AT.A CCGAGTACTCGTTGAACGTGTCGGCGAT 268158 33 90.9 28 .............................T.CA ACGGGAAGCTGTCGGGCATCTGATGGCG 268097 33 90.9 28 ..............T...............TC. AGCGGTGGGACGAGTACATGGCCACGCT 268036 32 97.0 29 .............................-... GCCGAGTCGAGCACGGCGTACGACTCCGG 267975 33 75.8 0 ...................C...CACGGC.G.. | ========== ====== ====== ====== ================================= ============================= ================== 8 33 91.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGC # Left flank : GAGCTTGCCGATGTCGTGCAGCCCGGCACACAGCCCGACCAGAGCCCGGGCACGCTCCAGCTCGCCCCCCAGCCCCATCCCCTCGGCAATCCGGACCCGCTGGTTATCCGACAGATAGACGTCCCACAGATGCAACGCCATCGCCGCCGCATCAAGGAGATGCCTCACCAGCGGATACGGAGGCCGGTCCGGATCCAGGCCCCGCGACTTCCCCCACGCAGACTCATCCAGCGCATCTTGCCTGCGCATCATGGCGTTTCCCCCCACTTCCACACTGGCTCGCGTCCCGCCACACGGCGGGAGGCCGCTCCGCCGACTGATCCAAGCACCCACCACTGACACCTTGACCCGACTGCTGTCATCCGACGGCCTTGCCGCCGAGTTCGTTTTCCCGGGCGTGCCTTGTATAAAGTGGGCATCGTGCGGCCCCTGGAGCGTTTTACCTCATCGGACGTGGCAAAGAACAAGCAAAGCCGTTTCTAAGCCGCAGGTCAGAAAGG # Right flank : GCGGGCTCGGGCTTGATGGCTGCGCCGCCAGGCCGACAAGATCCTCGGATCGGCTGGCCTGTGGCGGTTGCGTACCCTCGGCGGTCGCGTATCCCCGCGGTGACGGACCGCGCCGGGATCGACGGCGCTTCCGAGGCGCTGAAGTGGCGTGGCTGCCGGGGCGCCCGGTCGGTCGGCGTTCCCTCCTTCGTCGCATTTCGCTGCGGCGGCAGCTCGCCTCGCTCCATGACGACGTAGACGACGTCGCGCATCCGGCTCTGCCCGGCATGCGGCGCGGCGTGGAGTCCGCTTATGTGAGGGGTGGCAACTCTCTGTGATCGCCGTGGCGTCGCGGGACGGCCCTACGGCGCTGAGGAGGTACGACCCTGATGAGGCTTGTTCTGGCTTCGCGACTCGCGGCGGTGGCCGCGGCCGCGGCGACAGCGATCATGACGGTGGGGCAGGTGGCATCCGCCGTGCCGGCGGATGAGGACGGGAGACCGTTCCTCGGGCCGCTGCAC # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:-0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 280148-280975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIK01000004.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NRRL B-1477 contig4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 280148 33 90.9 29 .............................T.AG AGAGGTGCCTCGTACTGCCGGTCGGTCTG 280210 33 93.9 28 ..............................TC. GATGGCCAGCGTGCTCGTCCCAGGCCGC 280271 33 87.9 28 .............................TTCT GCGCGCCCGACGACACGTCATCGGAGAA 280332 33 97.0 28 ................................G GGACCCGGGGCGCGGCGCCGAGGTGATG 280393 33 90.9 28 .............................T.TT CGGCTGCACGATTGAGGCACTGTTGGAC 280454 33 97.0 28 ..............................G.. GGGCGGCGTGATGGATGACCGCTACGTC 280515 33 93.9 28 .............................T.A. GTGCTGGGCTGCGTACCGTGCCGATCAC 280576 33 93.9 28 ....................A...........T GGTAGACGCTGAGCGGGACCGCGTTGCC 280637 33 90.9 28 ..............................ACC CACGAGGGGGCTTCTTTGTGCCGTCAGG 280698 33 90.9 28 .............................T.CG CCAAACGTGAGGTGCGGGAGCTCGGTAC 280759 33 93.9 28 .............................A.C. TCAAGGTCGACGCTCTGGGTGAGGACGC 280820 33 100.0 28 ................................. GGTCGGGCTCGGTGGCCCGGTACAGAAG 280881 33 87.9 28 ........................GC...G.C. GGTAGTTGGTGGTGGTCGCCTTGGTTGA 280942 33 69.7 0 ..AT.........TT.T..A...TC......CT | A [280960] ========== ====== ====== ====== ================================= ============================= ================== 14 33 91.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGA # Left flank : CGTGCAGAACCTGCTGACCCCCGGCACCAACGCCGTCAACGCCGAGGCGTGGGAGGGCGACGAGGAGGAACGGTCCGAACGACGCGACACCCAGATGGTCCACCTCTGGAACCCCAAAGCCGACGTCCTGCCCGCAGGCGTCAACTACGCAGCCGGAGGCGACTGATGGCTTCCATGCTGGTGATCGCCGCCACAGCCGTCCCCGACCACCTCCGAGGCGCCCTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCATCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCACGCCGTCACCCTAAGCGTCGGCAACGGCGCAGCCGTCCTCGTCCACCCGGCCCCCACCGAACAGGGCTACACCATCCGAACCGCAGGCACCCGCCGCCGAGTCCCCGAGGACTTCGACGGGCTTACCCTGATCCGCATGACCGCACCACCAAAAGTCAAAGAAATGCAAAGCCCCTCTTAAGGTGCAGGTCAGGAAGA # Right flank : TTTGCGACTCCCGTCCGCAGGTGTTGGGCATCCGGGTCTGAGGCGACGGCCCATCAGGTGGCAGCCGTCGCACACAGCAGCCTGAAACCGATGGTGGACGATCACCGTATGGCGGACGACACTTCAAGCCCTGCACGCCGACAAGGCGCGTAACCGACCCGACCTGCGAAAAGGGGCACAGCGAACGCATCGGAGTGCGAATCGCCCGCAAGGACATGCGCTAGCCGCAGCGCCCGGCCGAGCGAATGCACGACCGGGCACTGCGGTGCGCGAGAGGACTGCAGACGGCCGCGTCCTTACAGCAACGTGCCCTGCTCATAGCGGTCTGCCAGCGGGCCCAAGCTCGCGGACCTTGTCGCCCGTGACGTCCTTCCACCACTTAGCGAAGATACGGCGGTGACACCACTGCGCCGGGTCCGTCAGGTCCTCAAAGCAGAGCAGGACCAGCCTGTGTTCCTTCTCCGTCTCGGCTATCTCCTGCAGCCGCGCCGCGATCCATG # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32961-36588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIK01000049.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NRRL B-1477 contig49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32961 29 100.0 32 ............................. TGGGCGCCCGGCGCCGAGCTGGCCCGCGCCGA 33022 29 96.6 32 ............................C CGCCCCTCCGCCCCGCGCGCACCACACACTGA 33083 29 100.0 32 ............................. TCGAAGCAGGCGTACGCCGACGACCTGCGCCT 33144 29 96.6 32 ............................C GGCCGCGGCGGCGGATGCGTTCGGCGGCGAGG 33205 29 96.6 32 ............................T GAGGCTCGCCATGAGCGTGATGACCCCTGCCC 33266 29 96.6 32 ............................T TGCCGTGCGTCCAGTCCCTTTACCATTCCGAA 33327 29 96.6 32 ............................T CCGGGTGCTGAGCGCCGCGCGTCCGCCTACGG 33388 29 100.0 32 ............................. CTCGGCGTCCCGTGGATTCCGGCGGAGGACGT 33449 29 100.0 32 ............................. AGCAGCGCGTATCCGGGCATCGGCAGGTCGTG 33510 29 100.0 32 ............................. AGGTCGGTGGTACCGGCGTCGCGCTGATCCCG 33571 29 100.0 32 ............................. CGTGCGGGGAAGGCGCGCATGGAGGGCCGGGA 33632 29 96.6 32 ............................C CACTGATGAGACATCCGCCGAGACAATCACGC 33693 29 96.6 32 ............................A CACACCCCGCCCGACCCCCGTTGACACCCACC 33754 29 96.6 32 ............................C CCAGTGGTTCTACCAGGGATGGCCGGAGCACT 33815 29 100.0 32 ............................. TTGTCCATCTGCGCCTTCCTGTCGCCTGGTGT 33876 29 96.6 32 ............................C CGTGATGTCTGCTCACGAGTACGCCATCGCCA 33937 29 100.0 32 ............................. TGCTACGCCGGATGCGGAGTCGAGGAGGTGCT 33998 29 96.6 32 ............................C TCGGGTGCCGAGCACAGGAGTTCGGTGGAGAG 34059 29 96.6 32 ............................T GCACCTCTTCCCGGCCAACGGCCCGCAGCGTG 34120 29 96.6 32 ............................C CGGTCAGCGGCGAGGCGACGCTGACGACGAGC 34181 29 100.0 32 ............................. AGGGCGAGCGCCGTACGGCCGCGCTGCTTGCC 34242 29 96.6 32 ............................C CCGTCCTGCGTCATGCCGACACCTCCCCGGCG 34303 29 100.0 32 ............................. GCTGGCGCGCAGGTGTTCGTCGGGGTCAGGGC 34364 29 100.0 32 ............................. TGCGGCGGAGGGTCGTACGGCTCGGCAACGGC 34425 29 96.6 32 ............................C TGCGGCCCCACGCCCCTTTGCCCGGCCCGTCC 34486 29 96.6 32 ............................T CGGCGCCCAGTATTGCGATCGATTCCGCGCGA 34547 29 100.0 32 ............................. GTGTTGTCCGACCGGCTCAAGCGGCTCCAGCC 34608 29 96.6 32 ............................T CGGCGTCGTAGGCGGAAGCGCCGGGGATGGAG 34669 29 96.6 32 ............................C GCCAGCCACCCCGCCACCGGTGCCCGGCTGCT 34730 29 93.1 32 .............T..............C CGGAGGAGCGGACACCCCGCCTCCTGCCGGTC 34791 29 96.6 32 ............................C AGGTGGGCCAGCAGCCGCAGCACGGGCCACGG 34852 29 96.6 32 ............................C CTTTCCGAGGAGGACTCATGACCGCACCGCAG 34913 29 100.0 32 ............................. CAGCAGCGCGAGCTCGCGGCCCAGCAGCGGAT 34974 29 96.6 32 ............................T GAGGCGATCCGGCGGTTTATGGCCGAGAGGGC 35035 29 96.6 32 ............................T CACCAGGGTCGGGCGGCCACCCTCCAGCGCTC 35096 29 100.0 32 ............................. TCCAGCCAGGCGAGGGCCGCCCCATGCTGTGC 35157 29 100.0 32 ............................. TGGGGCCACATGGCGGGGTCGAGATGCGGCGG 35218 29 96.6 32 ............................C ACGATCAGCCTCTGGGAGCGGGAGGCCCGATA 35279 29 96.6 32 ............................C AGGCCCTGAACGCGACCGGCTGACCCCGGCCA 35340 29 100.0 32 ............................. CAGGCTGCCGGTGTTGGTGATACGGACGTCGG 35401 29 96.6 32 ............................C GCGCGCCGCACGGTCCCGGACGCCATCGCCCG 35462 29 96.6 32 ............................C CGCCGTGGGCTTCGGCCTCGGCCAGGACGCGC 35523 29 100.0 32 ............................. ACTTCGGCACTGTGTCCGCGTAGGCGGGCCCA 35584 29 100.0 32 ............................. CGCGCCCAGCAGTTCTCCGATCTGGCTCACAT 35645 29 100.0 32 ............................. GCCCGCCGGACGGTCGAGCGGATGCGCCTGGA 35706 29 100.0 32 ............................. TACCCGGCGGAGATCTGGGCGGACTGGCTGTG 35767 29 100.0 32 ............................. CAGCCCTGGGCGGCCTGCATCCTGCACGGCGA 35828 29 100.0 32 ............................. TGCCGGAGGGTGTGGGCCGACATGACGATGCC 35889 29 96.6 32 ............................C CGTCATCGCGACGGCCGGGCCGACGGTCAGCA 35950 29 100.0 32 ............................. GCGCGGGTGTTGATCGGGTGGGGCTTGGCCTT 36011 29 96.6 32 ............................C AGCGATGGCCGCGGTCGGCGGACGGCTGGTCA 36072 29 100.0 32 ............................. GCCGACGCCGCCGTGCAGCTCATCAAGGGCCC 36133 29 100.0 32 ............................. TTCGCCGGGTGACCGCCGAGCCGGAGTTGCCC 36194 29 96.6 32 ............................C TCGCCGACGATGTACTTCTGGCCCAGCGGCAG 36255 29 96.6 32 ............................A GCCGAACTCCCGCGCCGCGCCCGGGAACCGGC 36316 29 100.0 32 ............................. AAACCGCAGGTCAGACCCCCCGGAAGATTTTG 36377 29 96.6 32 ............................C CTACCGGCCGGATACCAGCCGAGGCCGCGTTG 36438 29 100.0 32 ............................. GTCCATGATCTCCGCTCCGTAGTCGCCGTGGC 36499 29 100.0 32 ............................. GGCGCTGTGCCATCCAGCCCGAGAGGCGGTGG 36560 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 60 29 98.2 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Left flank : GCCGGTGCGCCAGCCAGGTACGACGCCAGAACCTCGAGAATGACATCCCGGCACTCCCCGACCAGCACATACAACTTCCCCGGCAAGCAGTCCCACATCACCCACCGGCCGCACCACGGCATCCGCCAACGCCCGACCGCTACACCCCATTGCCCACGCCGATCGACGATCGCGACACGTTAACCCGCCGCGACATACGCCGCCACGACCACCGCGGCAGCATCCTTCACGAATACCAACATGCAGCACTACCTGCACGGATGAGGTATTCGGCAGGGACAGAGCATCGATTGCCAGCATGGGAGCGACCTGGTCACCCCGCTGCTCCGGCCTCCCACGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGACCTCGTCCTCACCACCACGCTAGACGGCCCGCTGGCGCTGCTCACGCCAACCTCCAACTGAATGAAAACGGCATTGACCGGGAATAGAGTCCCAGGTCAGCAAGT # Right flank : GCTCGCCGAGCTGGCGCGCGTCCTGCGGGTGCCGTCGGCCCCGGCCGGGCGGTGACCTCCTCGGCTGAGCGTGCGGCCGGTGAAGACGGTGTAGGCCGCGATCTGTGTGACCTCCGCGTCCGAGATCAGCTCGCCGGTGTCAGGATCGATGACCGCCTTCGGGTAGCGGACCGGTGCCCAGGCGCCCTCGGGTATAGCAGCGCTTGCGCGCTTGATGGAGGGGTTCATCCCCGTCGTGATCGAGAAGTGAGCATCGGCCCGGTGGCAGGCGGCCACCACGTCGGCGTTGCAGAACTGGCTGTCCGCGCGCAGGATGCGGGTGCCGGTGCAGCCGGCCTCGCCGGCGGTGGCCAAGGCTTCGGTGACGAACCGTTCGAACCCCGCGGGAGTCGGCTGACGTGCCCTGCCGCAGCCGCACGGCGGCGATCACTGGCCGGGCGGTCGGGGTGCAGATCGTGGCCAGCAGCGGGTGCAACGTGCGGATCCCCTTGAACCGGCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40681-41693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIK01000049.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NRRL B-1477 contig49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 40681 29 100.0 32 ............................. CTCGAGGCCGAGGCTCAGGCTCGCCTGTGGCG 40742 29 96.6 32 ............................C CGGTCCTCGTGGCTGGCGGCGGCGATCCTGGA 40803 29 96.6 32 ............................C GCTCAGGCGATGGCGGACGGGCTGGCGGCGGC 40864 29 100.0 32 ............................. GCACCGACACTCCGGTGAGGATGACCGAGGAG 40925 29 100.0 32 ............................. TCCTTGGCGGCGCCCCGGGGTATACCGGGAGC 40986 29 96.6 32 ....A........................ GCCTTCGCGCCACTTCCGCTCGTGCGCTGACA 41047 29 96.6 32 ....A........................ GCACCACAGCGATCCTGTTCGCGGAGACGATC 41108 29 96.6 32 ....A........................ CTGACACCGTCGACCCCGACCTCCGGCCGGGA 41169 29 96.6 32 ............................C TGCAGCGGAACCGGACGGGGTGTAGAGGAGAC 41230 29 100.0 32 ............................. CGGCCCGGCACACCACCGGCCCTTGACCAACA 41291 29 96.6 32 ............................C GGCGGCGGCCGGTGGCTCGACGACCCCGACGA 41352 29 100.0 32 ............................. GTCTACCTGCTCCCAGCTGCCGTGCACGCCGC 41413 29 100.0 43 ............................. CTGATCCCTCCTGGAAGGGCTGGCCGTCTACTCGGTGGATTCG 41485 27 89.7 32 ...........--...............A CGCGAGGGCGTGCGGGTCGTCGAGGTCCGCGT 41544 29 93.1 32 ...........................TC GGGTCCGGGCAGGTGTACTCGACCGCCCCGAC 41605 28 96.6 32 .....................-....... CCGATGGTCAGCGGCACCGTGGGCGCGGGCGG 41665 29 69.0 0 ..T......A...........TCC.GCAA | ========== ====== ====== ====== ============================= =========================================== ================== 17 29 95.6 33 GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Left flank : CGGACAGCTTCATCGCGGGGCTGCGGGGTATGGAGTGCCTACATCCCGGCACTCCTCGACCAGCACATACAACTTTCCCGGCCAGCAGGTGTACATCACCCACCAGCTGCACCACGGCATCGCCAACGCCCGACCGCTACACCCATTGCCCACGCCGATCGACGATCGCGACACGTTAACCCACCGCGACATACGCCGCCACCGCGACCACCGCGGCAGCATCCTTCACGAATACCAACGTGCAGCACTACTTACACGGATGAGCTATTCGGCAGGGAACAGAGCCACCGATTGCCAGCATGGGAGCGACCGGTCACCCCGCTGCTCCGGCCTCCCCCGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGACCTCGTCCTCACCACCGCGCTAGACGGCCCGCTGGCGCTGCTCACGCCAACCTCCAACTGAATGAAAACGGCGCTGACCGGGAGTAGAGTCCCAGGTCAGCAAGT # Right flank : ACGGTGTGGGAGGCCTTGAGGGGGCCGACGCCGTCGTGATCTCGAGGGCTGCGGTTCGATGGTGGACTTTGCCGTGTATACGAGCGTCTCGCGGCCAGGGTCGACAGATCCCGTTGATACCCCAGGGTCACAGGGTCAGTCAGTGGATAGGTCAGACCCGCCGGGAGACGCTCCCGGATATCCTCCCTGTCAGTCGGGCAAGGCAGGCGCAGGCCGGCGCTCCGCAGGTGCATGCCGACGACCTACTGGTCTCGATCCCCGGCTGTCGGTGTTAGCGTCGGTTGCGGGCTGACAGCAGCAGGCCGTCGTAGTCAACGGGCCTCCAGCGGTCACGGCCCGCGGTGCGGACAGCCCAGCCCTGTTCGTTGGATGCGGGTTCGACGAGGACTGCTTGGCCGTCGCCGATGCGGGTGGCGAGGGTTTCCCAGAGGCGGTCGCGGATGCGGCGGCTGGGGTTGCCGACGAAGACTCCGGCGTTGACTTCGACCAGCCAGCGGGTG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 51919-52985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIK01000049.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NRRL B-1477 contig49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 51919 28 100.0 33 ............................ CCGAGTCCGGTCACCAGGACTGCGGCGGTGGTC 51980 28 100.0 33 ............................ GATCCTGTGTGGGGTGCGGTTTTCGGGCTTCAG 52041 28 100.0 33 ............................ GGTGTTGGACACGCTGTTCAAGGGCGTGAGCCG 52102 28 100.0 33 ............................ GAGAGGCCCCCGGTACCTGGGGAATGGGTACCG 52163 28 100.0 33 ............................ CCACGACAGATCACACACCCAGGCATTCCCAAC 52224 28 100.0 34 ............................ GACGCCTTATCCCCGGCGGAGGCAGCGGCCACCA 52286 28 100.0 34 ............................ AGGGCGGTAACGCGGGCCGGGTGTCGATGTGGGT 52348 28 100.0 33 ............................ GGCCCTCGCCCGGCAGTACGGCATCGCGCCCAA 52409 28 100.0 33 ............................ CTCCCGGACGCCGGGCACGCGGGCCGGGGCGTA 52470 28 100.0 33 ............................ GCAGCCTGACCACCCGCCGGGGCCGCTACCGAG 52531 28 100.0 33 ............................ CTGCGGCCCCACGCCCCTTTGCCCGGCCCGGCC 52592 28 100.0 33 ............................ GCGGATGGGGGCGAAGGAGATCGCCGCTGATCT 52653 28 100.0 33 ............................ TCCCACATGACCCGCTCCGCCATCACCCGCCCC 52714 28 100.0 33 ............................ CGACGAGTTCGCGGTCATCGCCTACACAGCACG 52775 28 100.0 33 ............................ TCCCTCGGCTCGCCGCCTCCCATCTCGCGTCCT 52836 28 100.0 33 ............................ GCTGCGGGCGGCTGGGCTGCTCGCGCCGTGACG 52897 28 100.0 33 ............................ GGCGGACCCGGGTGTGCTCGGGCGGATCCATGT 52958 28 92.9 0 ...........G.........C...... | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.6 33 GTCGGCCCCGCACCAGCGGGGGTGGTTC # Left flank : AACCGCACGTACCGCCTCGGCCCCCTTCGGCCATAATCGCTGAAAGGCTGGCGTCGCCTTCCCGCAATCGTGCACCCCACACAGCCAAGCGAAGAACCCACGCCCTCGGCCCTCTCCCCCCGCAACATCGTCCAACACACCTTTGGCAGACGGCGCCAGAAACCCGTCCCACATGCACTCAGCGACCGCCGCCGTATCCAGAAGATGCGACAGAAGGAGATTCTTCCTCCCACCCGCCTTCTCCTCGGACTTCCCCCAAAGCACCCCAAGGGCTGCCAAAACATCCAGGCCATCGCCAGACAAGGAACGCCCCACCGCATCTCCCTCTCTGCTCCGTAAGCTAGTCGGGCACCCTAGCCCCCACCACTGACAGCACCCCCGAAATGACCACCAGAGCCCGCTCCCACCACCTCACCGACACAGACTCCGCCATCATGTGCGTCAGAATCGAACTAACTCAAAACAACCCTGATCACGGATAGAACCCCAGGCCAGCAAGT # Right flank : CGAGGGTCCCGGGTCCGCGCGGCCATCTCGGGTGTCGACCCGACCTCGACTCCGTACCGGCCCATCTGGCTGCCGCGGCCCGGGCGTATCTGCGTCAGAAGTTCAGGACGGTCCCGGTGGCCGTCTCCGGCGCCCACTTCGGCATCGCCGAGACCGGCACCCTGTCGGTGGTCGAGTCAGAGGGCAACGGCCGCATGTGTCTGACGATGCCCGACACCCTGATCACCGTCATGGGTATCGAGAAGGTGCTGCCGCGTTACCAGGATCTGGAAGTCTTCCTGCAGCTGCTGCCGCGCTCCTCGACCGGTGAGCGGATGAACCCGTACACCTCGATGTGGACCGGCGTGACCCCGGGCGACGGCCCGCAGGCGTTCCACTTGGTGCTCCTCGACAACGGGCGTACCGCGGCGTTCGCGCGTCGTCCCTGCTCTCGCGCGGGCGGCCAAGGGCGGCTGGACCGCCGGGGGCGTGCCACGGGCCGGTCACCTCGCCGAACGCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCAGCGGGGGTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8398-8976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIK01000058.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NRRL B-1477 contig58.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8398 29 100.0 32 ............................. TCACGGGGTGTGACCGCTCCGTGACGGGTCCG 8459 29 100.0 32 ............................. CCGACGTGCGGCAGCTGCGCCATGTCGCCCTC 8520 29 93.1 32 ...........AT................ AGGGTGTCCAGCTCGGGCGTGGAGCCCGACGT 8581 29 96.6 32 ...........A................. GAGCCCAGGGTCAGGAGTACGCGGGCTGGGCC 8642 29 93.1 32 ...........A..............T.. TGGGACTCCACCCCGGCCAGCGAGGCGAAGAA 8703 29 96.6 32 .......T..................... GGCCCGAGCGCAAGAAGGACCGGTGAGCCTGA 8764 29 89.7 32 ...........A..TA............. AACCTGCGCCGCATCTGGGAGACCGACCCGGA 8825 29 93.1 32 ...........A..T.............. TCCGTCTCTCCGGCCCGCAGCTGGTCCAGCGC 8886 29 86.2 32 .......T...AT.....A.......... GGCCCGAGCGCAAGAAGGACCGGTGAGCCTGA 8947 29 93.1 0 ...........AG................ | G [8956] ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.2 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : ACGGCAGAAAGAACGCCGCATGCCTGGCGCGCCCGGAACGCCATGTGGGTGGATTCCCAGGCACCGGTCGGTACGCTCAGGGCAGGCGGCCGGGCATTGGGTTCAGCGGGCGGGGGTGTAGGCGATGCGGGCGCCACAGCAGCCGTCGGCGAGAGCAGTGAGAACTGCTGCTTCGCTGGGGACCGCCGACAGGCCTCAGCGGGACTTCACGACGCAGACACCGAGGCGAAGCCCACGTCGCCGGACGCGGACCGCGAGACATGCAAGATGCGCACATTCGCGCCCGACACTTCTGTGTTGGCCGCCACGATCAGCTTCGGCGCGCTCCAGTGCGACTTGGTGCAGGCCACCAGCGCCCCGAAACCCGGCCGGAGCAAGGCGTCCAAGCGCAGCCACTTCGGCAGGCATGCCCACAATGATGCAAGAAGTCTGAATTGACGGAATCGGTGAAAGTCTGGGAAACCGACCTCTCCCTGTGCCCAATCCACAGGTCACACAGT # Right flank : CCCGCTCCGCGCCATCTGCCAGGAGCTGGGCATCCTCAACGGCGTGGGCAAACCCGCGCTCCACCCCCACCGTTTTCGGCACACCCTGGGCACCCAACTCGCTGAAAAGGGCGCCCGCGTCCAGACCATCATGAAGGTCTTCGGACACAAGAGCCCCGGTATGTCGATGACCTACACGCACATCTCTGACCCCACGGTGCTGGCCGACTACCAGGCCGTGCTCCAGCCCGGCGCGGTCATCGCCGGTCCACTCGCCGACACCCTGCGCTCCGGACTCGACCGGGACGCGCTGGACTGGCTCAAGACCAACTTCTACAAGACCGAACTCGAACTTGGCCGCTGCCTGCGCCTGCCCCAGGAAGGCCCCTGCGAGTGTGACCTCTACCTGACCTGCGCGAAGTTCATCACCGCACCCCAGTACGCGCCCCGGCTGCGTGAACGGCTCTGCATTGAGCGGCAGTTGACCACCGATGTCAGGGACCGCGGCTGGGACCGCGAGA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //