Array 1 1510122-1509762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDZ010000001.1 Clostridium botulinum strain 2015006193-DFPST 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1510121 30 100.0 37 .............................. TACAAGACTATATTGATAAGCATTAAGGTATAATTTA 1510054 30 100.0 36 .............................. AGTTTATCTCATTTATTGATGCGGATTTGATGAAAT 1509988 30 93.3 36 ........G......A.............. TGAACTTATAATATATAATGTAATTAAAGGTTAAGA 1509922 30 100.0 35 .............................. TCTTTAGCGTCTTGATCTATACCTATATATTTAAG 1509857 30 96.7 36 ..................G........... CCAGTTAATTTATCTATAACCTTAAATACCATATAA 1509791 30 90.0 0 ...............AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTTTTTGCAGTAAACATTTATGATACGATTGTTTTAGATATAGGTCTTTTTTGTCATAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTCGAGAATGGGAGAAGTAGTTTCATTAATGAGTATAGTATATAGCTTATATATAATTGAAGTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGGAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : AAATTAAAATCCATGATTTTTTCCCTTTAAATTTATTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGACATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTCCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1517053-1516758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDZ010000001.1 Clostridium botulinum strain 2015006193-DFPST 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1517052 30 100.0 35 .............................. TCTAAATCTTTTGCACTTGCTAATTTACCTTTTTC 1516987 30 96.7 38 .................A............ TTAATATATTTACCAAGGTTTTATATTATCATACTTAA 1516919 30 100.0 36 .............................. ACTACTGCAGTAACGGAATGTGGTGGCAAACCTAAT 1516853 30 100.0 36 .............................. AAGGGTTCTCCACACTCTAGTTCTTTCATAAGTTCA 1516787 30 90.0 0 .......................C....GC | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAAGCAGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAGGTTGAACATTAACATGAGATGTATTTAAATTATTTACATTCTGTTATACCACAACATTTACAACATGTTGAACAATAACATAAGATGTATTTAAGCAGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTAGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTCCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGAGACAATAATATCACTGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAAATTTTTATTTGTTTTATAGTTAACGGTTATTTCATAGGGCTCTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1517843-1517333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDZ010000001.1 Clostridium botulinum strain 2015006193-DFPST 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 1517842 30 100.0 35 .............................. AAGGCAGTTATACAGGTTAATAGATTGGTTTTATC 1517777 30 100.0 38 .............................. ATTTGTCCAAATAACAATATTTATCACCCCCTATTCGT 1517709 30 96.7 36 ................A............. TTTCTATTTTCTTTAAAAAATTGCCTATCTACATTT 1517643 30 93.3 37 ............T....A............ ATAGATAAACAACTCTGAAGATATGCTTTGCTTACCA 1517576 30 76.7 118 .......CT......GAT..........GC AGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAG 1517428 30 90.0 36 ........T......GA............. TATTTACATTCTGTTATACCACAACATTTACAACAT 1517362 30 86.7 0 ........A.......A...........GC | ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 7 30 91.9 50 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : TAAGGATTAGAATAGGTTTTTATTATGTATTTTTTAAAAAGCAGAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGCCTATTTTACTATGATTGAACAATAACATAGGATGTATTTAAATTCTTTATATAGATGCATATCTTCTAATACTCCACCTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAATCCAAATTCCTGATTTGGTATGAGTCGCTTACTCCTTCGAAAAATAGAAGAAGTAGTTTTATTAATGAACATAGTGTATATATAATTAAATTTTTCCAAGTGAATTTAATCTTCAAACCTATCCTACCCATTGAAATATAAGGATTAGGATAGGTTTTTATTGTGTATTTATGAAAAAACAAAATCACTTGGAAAAATTTCTACAAAACCTTGTAAAATCAATGGATATATGATATTCTTGTAAATAAAGAATGGCTATTTTACTATG # Right flank : AGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTCTAAATCTTTTGCACTTGCTAATTTACCTTTTTCGTTGAACATTAACATGAAATGTATTTAAATTTAATATATTTACCAAGGTTTTATATTATCATACTTAAGTTGAACATTAACATGAGATGTATTTAAATACTACTGCAGTAACGGAATGTGGTGGCAAACCTAATGTTGAACATTAACATGAGATG # Questionable array : NO Score: 4.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.39, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 1531696-1531856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDZ010000001.1 Clostridium botulinum strain 2015006193-DFPST 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 1531696 33 100.0 32 ................................. GGTTACTGGCTTTCTAATACATATAATTAAAT 1531761 33 97.0 30 ..G.............................. CTATATAAAAGCCATTGGGAATTTTGTTTA 1531824 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================ ================== 3 33 99.0 32 TACATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : GCAAGTTTCTATTTTATCTATAAATTCTTTACTCAATCCCCTAATATTAAAAATATATAATCTATCCTTTTTATAAAATTTGTCTCTTTCTATAGGATAAAAACTATTAAATACGTAATTTTTGTACTGTTTCTTTGGATGTATTTCCTTTAAATCTTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATATCTTTTTTTAACATCACTGTTGCAATCAGTTCACAAAATTCCATTTATGCACCTCTTTATACAAATTTATCTATATTATACCATATAGCCTTTAGTTAATATAACCGATTATTCTACTTTTATTTTAAAAATATTATTATCTTTATTAATGATAAGTTACTTACCTATCATATTCTATTCTAAATCTTTGCATAAAATAAAAGCCTTAGATTTTTCTAGGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAA # Right flank : CCATAGTAAAATAGCCATTACTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTTTAAAGAAAATTTTCCAACCAATTATGATATTTTATAAATATATAAGGGAAACCTACCTTAAGCCTTACATTTCAAAAGCTAAGATAGGCTTATAAGTTAAAATTGGCTGGAAAAATATTAGCGTATTCTATATAATTATTTGTTATTTTTATCCTAAAATAAACGTAATATTCTAAATGGAAATATGATTTACCATTTAATCCCTCTGTTTTTAATATAGATAATTATGATATAATATCCAAGTTAGGATAGTAATTCCGTAGTGGATGGCTACGGGGGTTTTGAATATTTTATCCTCCTAGGATATTGGTGAGTCTTTCACTTATAAATAGGAGGTGGTATTGGATATGCTAGAATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCCAAACTAGTTAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 1532990-1532762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDZ010000001.1 Clostridium botulinum strain 2015006193-DFPST 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1532989 29 100.0 37 ............................. CATATTTTGTTCTACTTCTGAAACTGTTATAGGGTCG 1532923 29 100.0 38 ............................. CTTGTTATGTTTTCCTTTTTCATATAAAATCACCTCTA 1532856 29 100.0 37 ............................. TTCTTCCAAGAATTTATATTCATCTGAATACTCTATT 1532790 29 89.7 0 ...............T.A.......G... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 ATTGAACATTAACATGAGATGTATTTAAA # Left flank : AATCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGAGATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATCATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATCCTAGCCATTGGAATATAAGGCTTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCGATTGGAAAACGTTCTATAAAACCTTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTACTGTG # Right flank : AAAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //