Array 1 304210-299729 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVAE01000005.1 Leptospira interrogans serovar Hardjo strain OV5 Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================================================================================================================================================================== ================== 304209 33 97.0 38 .....................T........... CACCCAGCGGGATTCTTGGAAATAAATTACTCAACAAA 304138 33 97.0 39 .....................T........... CACTTAAATCGGAAGCATGTTGCGACTCGATTTCGAAAT 304066 33 97.0 40 .....................T........... CACCAAATATTCATGGCGCCTTGTCTCCCTGGGCTTCACA 303993 33 97.0 39 .....................T........... CACTTTTGGACAACAACTTCCTCGCTCCCCGCATGTTCT 303921 33 97.0 40 .....................T........... CACTAACAACATAGTCTTTAGAGATAGAGGCCATGACAAG 303848 33 97.0 40 .....................T........... CACACATACTAATTTTTGATCCAACTGTTGTTGTGTTAAT 303775 33 97.0 39 .....................T........... CACACAAAAAAAGACAAGTTGGTCCGGAATGCGTTTGGC 303703 33 97.0 39 .....................T........... CACCTAGAGTGGCGTGAATTTTTGCATGAGTTGACCCTT 303631 33 97.0 39 .....................T........... CACTATCGTTATCCGCCAAGGCGTTATCAGTTCTACAAT 303559 33 100.0 38 ................................. CACTTAACAACCATATCTGTAGTCTTATATGCAATTTT 303488 33 100.0 39 ................................. CACATCGGAATATTTGCCCCTTTTGTATCATAGTCGTAA 303416 33 93.9 230 .....................T........T.. ACGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGTGCCGGTAGGCGTTGAGCACTTGGTTCTTTTGTATATTTAAAACGACTTACAGTTT A [303388] 303152 33 93.9 39 ....................AT........... CACATTTCTGCATCCTCTTTTTCGTTCAGTTTCCACAGC 303080 33 93.9 231 .....................T........T.. AATGAAGAAAAGATCTGTTTTGGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTAGTTTATTCAAATAAACGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTTTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACCAACGTTTCGCGGGACCTTGATTCCTTCGGAGCGA G [303052] 302815 33 97.0 228 ..............................T.. ATGAGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTATTTTATTCAAAGAAATGTGGGAACTCCCACTTTAAAAAAAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACAGCGTTTCTAATTTTTCGTCTACAGTCACTTTACG A [302787] 302553 33 93.9 230 .....................T........T.. AATGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTATTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAAAAGGTTTCTACGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACCTTCAAAACACGATGCTCCCCGGAGTCGCTGGAAC G [302525] 302289 33 90.9 231 T....................T........T.. AATGAAGAGAAGATCTTGTTTTAGCCCAAATTGTTTGCTAAAGTGTGTAAACGGATAAAATGTAGGAACTACTACTTTTTCGAAAAACAGTACTTTGTTCAAATAAATGTGGGAACTCTCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGCGAAATAGAAGAACTTTTGATGTTTGATATAAAG A [302261] 302024 33 97.0 39 .....................A........... CACACGGACCAACCAGGTATAAAACTCCAACAGATTACC 301952 33 100.0 39 ................................. CACACGGACCAACCAGGTATAAAACTCCAACAGATTACC 301880 33 100.0 38 ................................. CACCCACGAAACAGATACAAAGCCTTCTATTTTTCCCT 301809 33 97.0 231 ..............................T.. ATGAGGAGAAGATTTGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTCCTGCTTTTCCGAAAAACAGTACTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAGAGAGGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGTCAGTGACGGCGAATTTCATGAGCCTGCATTTT G [301781] 301544 33 90.9 188 ..................T..T........T.. AATGAAGAGAAGATCTGTTTTGGCCCAAATTATTTCGCATAAACGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACAGCGTACTAGGTCGTGAATCACTTACTGGGGCTGAAAA G [301516] 301322 33 93.9 230 .....................T........T.. ACGAGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACAGTAGTTTGTTCAAATAAATGTGGGAACTCTCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACCTTCAAAACACGATGCTCCCCGGAGTCGCTGGAAC A [301294] 301058 33 93.9 229 .....................T........T.. ACGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAAAAGGTTTCTACGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACGAATAACTCGTTCGGAAAGCGTTCTGCGGATCTT A [301030] 300795 33 100.0 38 ................................. CACTTGATCGAAAGTCTTCGAATATTAAAATCCGATCC 300724 33 97.0 39 .....................T........... CACGACAGAATATTAAAAACGAAAGAACAAGAAATCTTG 300652 33 97.0 38 .....................T........... CACTTGATCACGACCGGGACTTTGATTGCTGTAGCTAT 300581 33 93.9 232 .....................T........T.. AATGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTTATACGACGAGAGCGAGGTGGCGGCTCTGTTACGC G [300553] 300315 33 97.0 40 .....................T........... CACGCAAATTGAGTTTTAGGATTTCTGCTACAATATCTTT 300242 33 97.0 39 .....................T........... CACCATTTTTGCTCTTCCTTAATATTCATTTTGTTTACT 300170 33 97.0 38 .....................T........... CACACTTAAGACCAAATCGTAACGTCTGGTTTGAGACT 300099 33 93.9 230 .....................T........T.. ACAAAGAGAAGATTTGTTTTGGCCCAAATTGTTTCGCACCAAACGTGCAAACGGATAAAATGTAGGAACTACTACTTTTCCGAAAAACAGTATTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACAGTTAATCAAAAAGATTCTGAGTATTTTAGAAGAG A [300071] 299835 33 100.0 40 ................................. CACGGTTCGAAGGCGCTAAGGCTTGGATGAAAGCGCTCGG 299762 33 97.0 0 ..............................T.. | A [299734] ========== ====== ====== ====== ================================= ======================================================================================================================================================================================================================================== ================== 34 33 96.4 101 CTGAATATAACTTTGATGCCGGTAGGCGTTGAG # Left flank : AATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATTGATTGCCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : GATGAAGAGAAGATATGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTACTACTTTTGGAGAGGTTCAATAGAACCAAATCGCAGAGAATAAAATTAATTACAGTGGCAAACATAAATTTTCCATTGACAAAATAAATACCTATTTTCAAATGGATTGTCATGAGAATTGCCCTTGACGCATACGCCTATATTGCTTTTACAAAGGGCAATCCAAGAATGACGAAGTGGATCCAAGAGGCCGAACACATCTACATCCCCTTTGTCGTTTTAGGAGAATTGCGTGCAGGTTTTTTAAGCGGAAATCGAACAAATAAAAAAGAGCGCTCCTTAAAGAAATTTTTAAATGATCCACGAGTAATTATTTTATATCCGGATAAACAAACGATACACTATTATTCACAAATTCGAAAAGACTTAAAAAAGCATGGAACTCTGATTTCTGAAAATGATGAATGGATTGCAGCATCGGCAATTTC # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //