Array 1 117133-116805 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIY01000046.1 Escherichia coli strain LVNMSB162 NODE_248_length_488106_cov_62.603184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 117132 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 117072 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 117012 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 116952 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 116892 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 116832 27 92.9 0 .......................C-... | T [116813] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCACTAAAGTTCACTGCCGTACAGGCAGCTTAGAAAGCGCACGGCGTGGCGACAGAGAGCACGCCCGCGTTCACTGCCGTACAGGCAGCTTAGAAAAGTTGGAGTATGCGCGTGGGCTTAAAGATNNNNNNNNNNTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 117685-117537 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIY01000046.1 Escherichia coli strain LVNMSB162 NODE_248_length_488106_cov_62.603184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 117684 28 96.4 32 N........................... AGCAAAAACCGGATATAGACAATCTCACTAAA 117624 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 117564 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGNNNNNNNNNNCTAAGCTGCCTGTACGGCAGTGAACAAAATCGGGCGCATAAAGGCGGCGCTTTTCATTTTCTAAGCTGCCTGTACGGCAGTGAACTCTTTGATCATGCTGCTGCTAATTCCGTTTGCTTTCTAAGCTGCCTGTACGGCAGTGAACAAGTTCCACTATTAACGGCGTGTCATTCCNNNNNNNNNNTTTTCTAAGCTGCCTGTACGGCAGTGAACTATGGAATACCGATTCATAACGGCGGAAATGTTTTCTAAGCTGCCTGTACGGCAGTGAACAAAAACAACGGCGTCATATTCACGCGACGTCATTTCTAAGCTGCCTGTACGGCAGTGAACACGTGATGCCACGACCCGCGCCAGCACGAATTTTTCTAAGCTGCCTGTACGGCAGTGAACGGGGATCTGCTGACTGGTTGTTCTGCCAGGNNNNNNNNN # Right flank : AGTTGGAGTATGCGCGTGGGCTTAAAGATNNNNNNNNNNTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCAGTTCACTGCCGTACAGGCAGCTTAGAAAAGCCAAAATAATGCGTCGCTTTCTGACATTTTGTTCACTGCCGTACAGGCAGCTTAGAAAGCTTGGGG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 117724-118059 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIY01000046.1 Escherichia coli strain LVNMSB162 NODE_248_length_488106_cov_62.603184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 117724 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 117784 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 117844 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 117904 28 100.0 40 ............................ ANNNNNNNNNNGGAATGACACGCCGTTAATAGTGGAACTT 117972 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 118032 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 6 28 100.0 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAATCAATGAGTTACATTACAACCTAGAAAAAGGGTCGGTTTGGTATTTCTTCAATCTCATATTTTCTGCATAGCTTTTGATAAACAATTGACCAGAACACATACGGTCATAATCTCCGTCCCGCGAACAGCGTGTTCATTGCGTAACCAAACAAATCAATCTATATAAATTCTTCTTGACCGTTTCACTCCAACTCCCTATAGTAGCGCCCCGTTGCCACCTATGAGGTCTGGCAGCAAAACAATTTGGTGAGGTGTCCGAGTGGCTGAANNNNNNNNNNATCTTTAAGCCCACGCGCATACTCCAACTTTTCTAAGCTGCCTGTACGGCAGTGAACGCGGGCGTGCTCTCTGTCGCCACGCCGTGCGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTTAGTGAGATTGTCTATATCCGGTTTTTGCTTTTCTAAGCTGCCTGTACGGCAGTGAANNNNNNNNNNCCTGGCAGAACAACCAGTCAGCAGATCCCC # Right flank : AATGAAAAGCGCCGCCTTTATGCGCCCGATTTTGTTCACTGCCGTACAGGCAGCTTAGNNNNNNNNNNCTTTAAAGAGGAGCTCGTACGAAAGTACGGGCTTTTTTTTGCGCCAGACATGGCCTACACAAAAAAGGCCCAACCGCATGGTCAGGCCTGTTAAAAATTGCAAAGCATCAAAACCAGGGAATAGTGGCGGTTGCGCTTAATCCATAACTACTAAATTCCCCTTTAACCGGTTCTTTGAGCAAATCACCATGACGGATAAACAACTTGAACTGTTGCTGACTCGACAAACTCTTCATATTAAGAAAGGGTAAATCGGTCCGCTGTTCAGCCTGCGTCGCCAGTCGTTCAATTGCCTGTTCTTCAGTTAGCCAGCCTTTTTTCACTGAACGCCTTAACAGACGCTGAGGGTTACTTTTTACCTGTACACGACTTACGACTCGCCAGCCTTTAATTTCAGGAACTGGCGTGACAGGCGAACATTGGCAGTAATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 127340-126752 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIY01000046.1 Escherichia coli strain LVNMSB162 NODE_248_length_488106_cov_62.603184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 127339 28 100.0 41 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATGNNNNNNNNN 127270 28 96.4 32 N........................... AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 127210 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 127150 28 100.0 41 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCNNNNNNNNNN 127081 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 127021 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 126961 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 126901 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 126841 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 126781 28 85.7 0 ....................T...C.CT | C,A [126755,126758] ========== ====== ====== ====== ============================ ========================================= ================== 10 28 98.2 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //