Array 1 106942-106137 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLB01000006.1 Salmonella sp. S087_02702 NODE_6_length_223206_cov_192.932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106941 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106880 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106819 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106758 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106697 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106635 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106532 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106471 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106410 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106349 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106288 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106227 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106166 29 96.6 0 A............................ | A [106139] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125177-123074 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLB01000006.1 Salmonella sp. S087_02702 NODE_6_length_223206_cov_192.932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125176 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125115 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125054 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124993 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124932 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124871 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 124810 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 124749 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124688 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124627 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124566 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124505 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124444 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124383 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124322 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124261 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124200 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124139 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124078 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124017 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123956 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 123895 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123834 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123773 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123712 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123651 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123589 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123528 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123467 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123406 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123345 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123284 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123223 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123162 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123101 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //