Array 1 1186267-1186567 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041609.2 Streptomyces sp. S1D4-20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 1186267 28 96.4 33 ......................C..... GGCCAAGCCATCGACGGGGAAGGGGAGTCGGCT C [1186272] 1186329 28 100.0 33 ............................ GTCGCGTTTGGTGACGTATGCGCTGATGTATTC 1186390 28 96.4 33 .......................T.... GAGCACCGCCGCCGACCCGTCCGCGTGCGGCAC 1186451 28 96.4 61 .................T.......... GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTC 1186540 27 71.4 0 .C....A....A...C.TT...-....G | C [1186554] ========== ====== ====== ====== ============================ ============================================================= ================== 5 28 92.1 40 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : CGACTCCACGGCCGGCGCGGCCTCAAGGCGGGCCAGCCAGGCGCGCACGACGTCATGCAGCGGGGTGAGACTGTAGGAGTGCCGGGAGTCCTCCAGTGCCCGCGACCAGTCCTGCTCGAACGCCGGCACCCAACTCTCAGCCCGGGCACTGACACGGAGCTGAGCGAGCAGCTGCGCGGCCGCGGTCGGCGCGATCGGCGCCGGCGGGACAGCCGCGTGATCGGGCTGGGCACTCATCGCCACCTCCAGGCAGGTCCTGACGCCAACGGTACGCGCGCCCCGCGCCGCCATCCAGACGATCCGTCAAAAACTGCTGGTCACCACCAGCGTCGGGCTGGCCCCGCCCTTCATCGGCTGCCGCCAGCACTGAGGATTACAGCGAGGACAGCGACCAGGGCAGCCACGGTTGCAACGCCGGCAGTGACCGGACCGTTCAGCGACGGACGTCGGTGAACCAGGGAGGACTACGGGCCGCCGGTCGGTCCCGCACAGCTGTACCC # Right flank : GCAATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCCTCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCATCCCTGGGGGGACCATGTCGTACAACCAGCCGCCGCCACCGCCCGGATACGGGCCGCCGGCCGCCCCTGCACAGCAGCCGCCCAGGC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1420328-1419844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041609.2 Streptomyces sp. S1D4-20 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 1420327 28 78.6 33 C..AC......CTG.............. GGAGGGACGCGATGAGCGGGCCTGCCACGCGCC 1420266 28 96.4 33 .......................A.... GTCTTCTGCTACACCGTCGGTTTCGTCCTCCTC 1420205 28 100.0 34 ............................ AGGCGGCAGCAAAGCCGCGCGAGTTGAAGCTTCG 1420143 28 96.4 33 ........T................... GCCGGACCTGATCCTTCACGTCCTGCGCGATGC 1420082 28 100.0 33 ............................ GCCGCTTCCCAGCATTCGACTCAGCCCGATTCC 1420021 28 100.0 33 ............................ GGCCATCACGTCGATGTCGGCGACGGCGGCGTT 1419960 28 96.4 61 .................T.......... GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTC 1419871 27 71.4 0 .C....A....A..C..TT...-....G | C [1419854] ========== ====== ====== ====== ============================ ============================================================= ================== 8 28 92.4 37 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : GGAGTCCGGGGATCTCCTCGCCCGGGCCGTAGAAGTGCCGGAACCGCTGCCAGGGGACCTCGTCGTACCTGAACCCGTCCTTGACCTCCCGCGAGATCGCGCCCACGGCCGTCCGTACGTCGCAGTCCGTGCCGACCCACCGTTCCGGCCAGCCAGCCCAACGGTCATCGTCCATGGCTTGGCCTTCCAGTTCACCGACAGCATCCGAACCCCGGGAGTTTAACGACCGGTGATCAAGAGGCGGACCGCTTCTGCCGCACTCCGGTGGCACCGCACCACAGCGACGTCATTTCTCGTTCTCGTGAGCATCTGCAGCACTCAAGATCGCCATCTGCTGTCCAAACGCTGCTACTTCACGTGAACGAAGCCACCGGCCGGCTCACCCCCGCCTGCGCAGGGAGGACCGAAGAACGAAACGGCAAGAATTCCGGGACGACGGCTCACCCCCGCCTGCGCGGGGAGGACAGGGTCTTGGGAGGATCACTCTTTGTACCCGGCGG # Right flank : CAATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCATCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCATCCCTGGGGGGACCATGTCGTACAACCAGCCGCCGCCACCGCCCGGATACGGGCCGCCGGCCGCCCCTGCACAGCAGCCGCCCAGGCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //