Array 1 9349-10030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEST010000026.1 Staphylococcus sp. GDH9D125P GDH9D125P_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 9349 36 100.0 36 .................................... AAAATCGAACACCGAACAGATGTTCGTGGCAATCCG 9421 36 100.0 36 .................................... ACCAGTTCTTACTTGCCATACGTGACGGAATTCGTG 9493 36 100.0 36 .................................... ACGTTTTCGATTGTTTTTAATAAATCTTGTCTACTC 9565 36 100.0 37 .................................... AAAAATACAAGTCCATATCTGTAAAGTCTCTCTTTCA 9638 36 100.0 36 .................................... TCAAACGGTGTTCCGTCTTTGCGAAAACATTCGACT 9710 36 100.0 35 .................................... TTCAAAATATCATTGATACATTCGATTATAATATC 9781 36 100.0 37 .................................... TAAATTTATTATCAAGCTTTGTAGCCTTCTTGCTTAC 9854 36 100.0 35 .................................... TAAACATATACCCACCTATTGAAAAGGTTAAAGCT 9925 36 100.0 35 .................................... TTAATTTAACTTTAATTAATTGGTCATAAACTTTA 9996 35 91.7 0 ...............................-..GT | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 99.2 36 GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Left flank : CATGCTTTTCTTCAAAAGAATCTGATACATATTTTAAAAAGTTTAAACCTAATGCTACATTTTTATACTCAGCAGTATCCATGCATTCTCTTAATTTATCGGCAGCTTGCCATAATTTTTCTTCAAAACCTATTGTTGTCATTAATAATACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTAGTCACTAATTTTATCCCTTATTTCAAATTAAAAAGGAAGAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATCAAATGTAGTATACTTTTAATATAAGGGAAATCATTATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTATCGTTAGTTGTCACATTTTTTGACAGCTAAAATAATAATTGACCCCTAATGGTTATGCTATTTATTGAAGCATCGG # Right flank : TGTATTTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTACTTCTCCCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAAACATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTACATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 18745-19215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEST010000026.1 Staphylococcus sp. GDH9D125P GDH9D125P_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 18745 36 100.0 36 .................................... TTAAAGTTTGTCATTTGTAATTCCTCCAAATTTTTA 18817 36 100.0 39 .................................... ATAATTCAACACGTAGTATATTTACAAATTTATCTAAGT 18892 36 100.0 38 .................................... TGCAGTATAAGACTTTATTATTTTATCTGGTACAACTT 18966 36 100.0 35 .................................... TGATCTTTATCCCAAGCATCACCATATAGTTTGTC 19037 36 100.0 37 .................................... TTTTAACCGTAAATCATTCTAAAAACTACCCAAACTG 19110 36 100.0 34 .................................... ATGAACTCTTGCTCGTCTTTGCTTGGTTGTGTTG 19180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 100.0 37 ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAGCATTAGATTTTTTGGAAAAAAACATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTTTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCGCTATTTTTGACAGCAAATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAGCTATCT # Right flank : CATTACTTGCTGCCTCATTGTATTCTTTTGTAATTTGTATTCGATAACCACTTTGTATAAGAGAGGATAATAATTTATAATTTCATAGTTAACTTGATTTTCAAATACAAAAAAACTCATTTGCATTTAAAAGTAGAAATTAATTAGTTTAAATAATAAAATAAGTAATGAGATTAATAAGATATTGGAATTAATAATTAGGAGGGGTTAAGTAGTGGAGAACATTGATGGTAATAAAATAAATAGTATTTTAAATTGGGTTTATGAAAAAATTCTAAGTGGCTTACCAGGAGCTTATTCAGCCGAAGAATTAGCAAATAAATATTTAGAAAAATATAAAGATGAAGACAAAGTTATTAATAAATTAATAAAAGGACAGTTAAGTAAAACTGAAACTTTCGGTTTCATTACAGGCTTAGGCGGTATAGCTACACTACCAGTAGCACTCCCCGCTAATATAATTTCAGTTGTATATGTACAAATGTGAATGATTGCAGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //