Array 1 317086-318699 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYA01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X1220 NODE_1_length_363407_cov_72.575679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317086 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 317147 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317208 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317269 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317330 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317391 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317452 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317513 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 317574 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317635 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 317696 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317757 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317818 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 317879 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 317940 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318001 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318062 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318123 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318184 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318245 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318306 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318367 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318428 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318489 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318550 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318611 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318672 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334832-335471 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYA01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X1220 NODE_1_length_363407_cov_72.575679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334832 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334893 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 334954 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335015 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335076 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335137 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335198 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335259 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335320 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335381 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335442 29 96.6 0 A............................ | A [335468] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //