Array 1 221053-219312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERM010000002.1 Salmonella sp. 32040203201700040FB01SM01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 221052 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 220991 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 220930 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 220869 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 220808 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 220747 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 220686 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 220625 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 220564 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 220503 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 220442 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 220381 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 220319 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 220257 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 220196 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 220135 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 220074 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 220013 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 219952 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 219891 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 219830 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 219769 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 219707 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 219646 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 219585 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 219524 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 219463 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 219402 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 219341 29 93.1 0 A..............A............. | A [219314] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237739-237223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERM010000002.1 Salmonella sp. 32040203201700040FB01SM01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237738 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 237677 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 237616 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 237555 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 237494 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 237433 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 237372 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 237311 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 237250 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCGCAGAACGCCGCATCGCCGAACTGGACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCGGTTTATCTGCTCCAGACCGATCGACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGCGGTGATAGTATGCGGGGAACTATAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAACGAAGATGACCTTTATTAGAGATATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGCGGTGATAGTATGCGGGGAACTATAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAACGAAGATGACCTTTATTAGAGATATCCGTGTTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCGCCAGCGGGGATAAACCGTGCTGAATCTTTGCGAGTGGGATGATGGCACT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 238693-237932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERM010000002.1 Salmonella sp. 32040203201700040FB01SM01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238692 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 238631 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 238570 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 238509 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 238448 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 238387 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 238326 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 238265 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 238204 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 238143 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 238082 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 238021 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 237960 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GGAAACGAAGATGACCTTTATTAGAGATATCCGTGTTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCGCCAGCGGGGATAAACCGTGCTGAATCTTTGCGAGTGGGATGATGGCACTGTGTTTCCCGCGCCAGCGGGGATAAACCGCCGCTACGATCTATTCGAATCATAGTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGCGCCGGGATATTGCGCCGCGCCGAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTTTATTCTAATGGGTTAGATAGGGTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //