Array 1 95072-96076 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTPI01000005.1 Escherichia coli strain 10433wC8 NODE_5_length_216458_cov_33.994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95072 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 95133 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 95194 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 95255 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 95316 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 95377 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 95438 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 95499 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 95560 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 95621 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 95682 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 95743 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 95804 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 95865 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 95926 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 95987 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 96048 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121779-122906 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTPI01000005.1 Escherichia coli strain 10433wC8 NODE_5_length_216458_cov_33.994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121779 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 121840 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 121901 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 121962 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 122023 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 122084 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 122145 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 122206 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 122267 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 122329 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 122390 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 122451 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 122512 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 122573 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 122634 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 122695 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 122756 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 122817 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 122878 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //