Array 1 179167-179620 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKEV01000003.1 Corynebacterium lowii strain NML 130206 Clow_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 179167 28 100.0 33 ............................ GTACGGGCCTGGAGCTGTGGGTGCTGACCATCA 179228 28 100.0 33 ............................ GTTTAACCACAGTCCCTCACCTGGTCAAACGTA 179289 28 100.0 33 ............................ GGTGTGTGTGGGTTGTTTTTGTTTCAAATCCCA 179350 28 100.0 33 ............................ GTACGGCTTCATCTTCCTTCACCTCCTTTCGTC 179411 28 100.0 33 ............................ TGGTCTCATGGAGCCGGGTGGTACCAGGCCGCG 179472 28 100.0 33 ............................ TATCCCCCGCAGCAGCCCGCGCCGCCTCTACCG 179533 28 96.4 33 .............G.............. CTCGAACCACTTAAGCTCGGGGGCGGTGCGATC 179594 27 89.3 0 .....................A.-...T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.2 33 GTATTCCCCGCATACGCGGGGGTGAGCC # Left flank : GGCAGCGCACCGTGGACGAAGTGGCCCGCGAATACCCCGATGTGACCGTGGAATACAACCACATCGACGCCGCCACTATTTACATGGTGACCAAACCCGAGCGCTACGACGTGATTGTCACCGACAACCTCTTTGGCGACATTCTCACCGACCTGGCTGGGGCCATTACTGGAGGCATTGGCCTTGCGGCCTCGGGCAATATCGACGCCTCGGGGGCCAACCCCTCCATGTTTGAGCCGGTGCACGGTTCCGCGCCCGACATCGCGGGCAAGGGGATTGCCGACCCCACCGCCGCGATTCTTTCCGCTGCTTTGCTGCTGCGGCATTTGGGAGATGAAGAAGGTGCTGAGCGGATTGAGAAGGCCGTGGCTGCTGACGTGGGGGAGCGCTCTGGTGAGATCGTGACCGCTGAGGTGGGAGATCGGATTGCGGCAGCGGTATAGCGCTGGAAGATGTATGTAGAATTGGTCTGGGCTTGAGAATCTTGCAGGTGGGCAAGT # Right flank : TTTACTACTGAGAAGCCACTTGGAGAGTTATGTTTGTTGCTAGGTTGAGCTCGGCTTTTCTAGGTTCCTTTGGGAACTTTACCGCTGGTGCAGGCGGTTTCCATTGGCATGCGCACTACGTTTTCTCTGATTAGTATTATATTATTGTTGTTCGTATTACCTTCGCCAATCGTAGGTTATTACCCCTGCCATTATTTTAGTATTACTAGAGAGGTGAGATATGAGTTACAATCAAGATATTGTCTTGCTCGGGGGAGGGTTCTCGGATTCCTCCGATGATGGGATGGATGAGTATTTAATTAGCGGCTCGGGTGTGAAAAATCCCAATGTGTGCTTTATTCCCACGGCGAGCGGCGATTCTCCAACGTATATTAGGCGGTTTTATGAATCGATGGAAGGATTCCGGTGCCGCCCTCATTACGTCGAGCTGTTCGTTCTATAGACGATCTAACTGAATTTCTAAAACCAATGGACATTATATATGTCGGTGGTGGCAATAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCATACGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 242665-244035 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKEV01000001.1 Corynebacterium lowii strain NML 130206 Clow_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242665 29 96.6 32 ............................G TACTGGACGTTCTCGTAGAGAAAGTCCCTGGA 242726 29 96.6 32 ............................G TGCGTGCGTAGAAGCGCGGACCATCCGTCTTT 242787 29 100.0 32 ............................. GACCATAGACCTCACGCACAAAGGACCAGTCC 242848 29 100.0 32 ............................. ACGATTCGTCCGGTCATCGCTCCCCACGCGGT 242909 29 96.6 32 ............................T ACCCATCCGCCAGCGGCGCGTATCTGCCGGGC 242970 29 100.0 32 ............................. ATGTGATACTGACTGCGGAAATGGAAGTTCTC 243031 29 100.0 32 ............................. AAGCCGCCGCAAGGAAGAACCCCACCCCGACT 243092 29 96.6 32 ............................G AACGAGGTGAAGATATTGCGTACTCCACGGTG 243153 29 100.0 32 ............................. ACAAAGGGCAGAGGGTACCGCATGTCCAAAGT 243214 29 100.0 32 ............................. AGGTTCCGTTGCAGCCTGTTCGTTGAGGGTTT 243275 29 96.6 32 ............................G GCCCTGGAACGCCATCTTCAATGTGCCCACTG 243336 29 96.6 32 ............................T ATCGCCAAGTGGGTAGGAGCGCTCAAAAAGCT 243397 29 100.0 32 ............................. CCTGAGCCACTAACCCCCTTACCACCGAGGCA 243458 29 96.6 32 ............................G GCCCTGGAACGCCATCTTCAATGTGCCCACTG 243519 29 96.6 32 ............................T ATCGCCAAGTGGGTAGGAGCGCTCAAAAAGCT 243580 29 100.0 32 ............................. CCTGAGCCACTAACCCCCTTACCACCGAGGCA 243641 29 96.6 32 ............................G CACGATACCGGCGCGGTCTGTCAAATCGAATA 243702 29 96.6 32 ............................G CCCGCGCACCCATCGGAAAACCTGCCCGTAAA 243763 29 100.0 32 ............................. TTTACCCTCGCACTTTCTAGTGACCTACCTAA 243824 29 100.0 32 ............................. CCAGCCGTTCTTGCCGGCCGTCTAGCCGTCGC 243885 29 93.1 32 ........T...................G GCTGCTAAGAGTCTACGGAGACTCTACCCAGA 243946 29 93.1 32 ..........G.................T GCACCACCGTGGTCTCCTTGATCTGGAACAAC 244007 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.9 32 GTGTTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GGCATGAACTGGGGCGAGGAAATCGAGGAACACCAATGATGGTGCTCGTAGTGACAGCCTGCCCCGCGGGTCTGCGTGGTGACCTCACCAAATGGCTCATGGAAATATCGCCCGGTGTGTTCGTAGGGCGGCCCACGGCAAGGATGCGAGAACAACTCTGGGACCGAACCGTAACGCTGGTGAAGGATGGGCGGGCGTTGCTGGTGTACAGCGCGGCGAATGAACAGGGGATGGAGTTCAAGACGCACCGGCACGACTGGCAACCGACAGACTACGAGGGGCTGACGTTGATGCTGCGGCCCGAGACCAAGCCGGTGGAGAATCGGCGGCGGACGGGGTGGAGTATGGCGCGGAATGTGAGGCGGGGGAGACGGTGAGATTGGGTGGGGTGATTTTTTTGGGGGGGATGTTGAGGGGAGAATGGGGGTGCGCGGGGTGAGGTGTGGGGGAAGTTGTAGCTAGAATGGGTTTTCGGCTCTTATTCTTGCTGGTCAGCAAGT # Right flank : CCAGCTGGGGAGAGGGCACTGTGGTTCAAGTAGTCTTTGCGTTCGCTGCGCGCAACGTCGCTATACTGGTGGCCAAACCGCGATAATCTTTAGTGCGAGTCATTTCTTCTTCTACTTTGTCGAGGAGATTGTCGGAAACATGGAGATCGTCGTGATTTGCGTACCACAGAGCGTAATCCATGCCTAGTCAGTGTTCTCCGCTTATGTCGTCACTAATCATTTGCGTTTGTGCTCGAAGAGATAAGTCATCTCAGAGTGATTGAGTCACTTCAAAAGAAATGGAGTCATGGCATGATTGTGGTAAATTAATCATAACTTACGTGATTGTACTGCCTGTGTAGAGGTGCGTACTGTCTGTGGCTAATATTTGTTGAATTAATAATGGCATATATAAAAAATGGGAGACATGTTGTTTAAACGTAAACATGTAGAAGTTATTTGGGGGGCGGTTTTTGCACGTGGAGATGAATGGTGCATGATCCGCATGATGGAAATATGTA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //