Array 1 17400-19930 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFU01000010.1 Salmonella enterica subsp. enterica serovar Muenster strain 03-0374 NODE_10_length_179397_cov_5.43005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17400 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 17461 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 17522 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 17583 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 17644 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 17705 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 17766 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 17827 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17888 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17949 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 18010 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 18071 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 18133 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 18194 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 18255 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 18316 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 18377 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 18438 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 18499 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 18560 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 18621 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 18682 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 18743 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 18804 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 18865 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 18926 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 18988 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 19049 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 19110 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 19171 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 19232 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 19293 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 19354 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 19415 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19476 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19537 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19598 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 19659 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 19720 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 19781 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 19842 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 19903 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 462358-464032 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFU01000004.1 Salmonella enterica subsp. enterica serovar Muenster strain 03-0374 NODE_4_length_464216_cov_5.55905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462358 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 462419 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 462480 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462541 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 462602 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 462663 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 462724 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 462785 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 462846 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 462907 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 462968 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 463029 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 463090 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 463151 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 463212 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 463273 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 463334 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 463395 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 463456 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 463517 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 463578 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 463639 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 463700 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 463761 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 463822 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 463883 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 463944 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 464005 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //