Array 1 705212-706140 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADJX01000002.1 Escherichia coli H605 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 705212 28 100.0 32 ............................ CGAACCTGAAATACCAGTGTCTTATTCTCCTG 705272 28 100.0 32 ............................ TGTAGATAAATAGCTGTTTGAAAGGCATGTTA 705332 28 100.0 32 ............................ GAAAATATTCTTGCTGATGAAGTTTCGACTGA 705392 28 100.0 32 ............................ TCGGAATCTATTGCTAATTTGTATTTTTTAGC 705452 28 100.0 32 ............................ GATTGAATATCTGCGAGATCAACGGTGGTTGC 705512 28 100.0 32 ............................ GCTCTGGCTACCGGCGGTTGCAGGTCTGGCTC 705572 28 100.0 32 ............................ TGAGAAATATGCTCCGTCACATACCCTTCCGT 705632 28 100.0 32 ............................ TGTTAATTTCTGGCATGAACAGCGATACATCA 705692 28 100.0 32 ............................ TCACCCTGAGAAGGATATTGCAAACGGGACAC 705752 28 100.0 32 ............................ GGAGATACCCCCTCAGCCTTTGCATCGCATTC 705812 28 100.0 32 ............................ GGGGATTCCTGGTCTTCGACGGGCAGCTCGTT 705872 28 100.0 32 ............................ GCGATGCGGTTACCCTGTCCGCGCCCACGATA 705932 28 100.0 32 ............................ TCATTAATCGCTCGCGAACGCGCGCTAATGAG 705992 28 100.0 32 ............................ GGGTCGTCGTTCCTGCTCGATGCGTTATCGAA 706052 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 706112 28 89.3 0 ....................T...C..T | C [706135] ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGTTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACTGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTCTATGGTTGCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 715320-715766 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADJX01000002.1 Escherichia coli H605 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 715320 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 715380 28 100.0 32 ............................ AAGCATGACGGCCAAATCACTCTTTGCAGAAA 715440 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 715500 28 100.0 32 ............................ TGGACGCTGATGACCTGAGCGATGAAGAAAAA 715560 28 100.0 32 ............................ CTGCTCCTCTAATTTATGCAGATATGCGTTTA 715620 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 715680 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 715740 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : AATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 156942-156104 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADJX01000008.1 Escherichia coli H605 supercont1.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 156941 29 100.0 32 ............................. CCACTGGTGACCAGGTGATTTCAGTTTCGACG 156880 29 100.0 32 ............................. CGCATGGCGGACTTTCTCCCAGCGCGGGAAAT 156819 29 100.0 32 ............................. GCCATCCGTGATAAGACGTTCGGCGCCGTCGG 156758 29 100.0 33 ............................. CCAATCCGCAGGGGAGTTCTGCTACACGTTCGA 156696 29 100.0 32 ............................. TTGGGTTGTGATTCAGATGGCGTAATAATACC 156635 29 100.0 32 ............................. TTAGATTTAAGGAAGAAGAAATGAACGATTTA 156574 29 100.0 32 ............................. GTCGGACTAACCATATTAGGTGTACTTATGTT 156513 29 100.0 32 ............................. TCGTGTGTCTTAACTATGAGGTTATCGAATGG 156452 29 100.0 32 ............................. TATTTATCTTCCACAGTGTTCGGTCCTCCGGT 156391 29 100.0 32 ............................. CAATCCGGTAAACGTGTGCCTGGGCTCAAGCT 156330 29 100.0 48 ............................. AACCGCGATGCAGCGATGCAGCGATGCAGCGATTCACCGACCGGGCGC 156253 29 89.7 32 .......A....T......C......... TCGATCGAGGATAAACAGGCGGGGCAGGGACT 156192 29 96.6 32 ............T................ GATAAACGCGATGCGGCGCAGCAAAAAATCAA 156131 28 79.3 0 ........T...T.........-.C..TC | ========== ====== ====== ====== ============================= ================================================ ================== 14 29 97.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTTGAAGTGCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGA # Right flank : AGCTTCTATTTTCAAACTCATCAAGACGCCTTCGCCAGCTCTTTCACTAGCGGTAGCATTATCCGCATTACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACATCATGCCAGCTAGTTCCCTCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTTCCCAGATTCCAGTTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACCTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCGTGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //