Array 1 92253-93051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCFV010000105.1 Planktothrix agardhii strain PCC 10110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 92253 36 100.0 36 .................................... TTGGTTGATTCTGATAGGCTTGATGCTCAGGAATTT 92325 36 100.0 41 .................................... TCCTGAATACTCGCTTTAGCCTGTGCTAGTTGCACCTTAGA 92402 36 100.0 39 .................................... TGCATATGGCTTGGGATAAACACTTCAGGTTTTTTCTCT 92477 36 100.0 36 .................................... TTTCAGCGATTCTTTCTATCGTAAATACACAGATCA 92549 36 100.0 42 .................................... CATTTTTAGATCCTCTGATAATGTTTAGACTGATAACTTTTA 92627 36 100.0 51 .................................... AGTATGAGCTTTAGAAGCTCTAACACATGAAACTCCTCTGTCCCATCTAAC 92714 36 100.0 46 .................................... ACCCAAAATAGGGTTTTTAATTCTTCAAACTTAGGATGTTCTGTAA 92796 36 100.0 40 .................................... ACAATGCCAACCGGATTTTGATTTGCTCTTTGACTGCCTT 92872 36 100.0 36 .................................... TTTTCTCACTCAACCCTCCTTGTTCTTGTGATTACT 92944 36 100.0 36 .................................... GCGGTGTCCATGATGCTCGTAACCGTCGGAGGCTCA 93016 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================== ================== 11 36 100.0 40 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACAAATCCAGAATTAGCAAAACAGTTAGGAGAAAAAGGTTATCAAAGAGCCATGACCCAATACACCAATAGGGCACTCGCTCAAGAATTGTTAATTTTTTATCAACAATTACTTGATCGCTGATGTTATTCTATATTATTGCCTATGATATTCCCTGCCATAAACGTCGTCGCAAAGTGGCGAATTTATTGGGGTGAATTTAGCTGAAGATAACCTGCGGTTTTATCCCATTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCATGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATCTTTTCTGCGAGGCTCAGGTAGAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTGATCTGGACAACCGATGACGTATGGGTTTAAAATGGGAGGA # Right flank : CTCGTTGAAATAGATGGGGGGGTGGAGTTTTCTTTCGTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCAACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCAAATAAACGACCAGCTAAAACCCATCTGCTCTTGTGGTTACTCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTATGGATTCTCTCTGTCGAGTGTCAAATTATATCAAAACAATATTATCCTGAATATCCTCAATCCAATTAAAAATAGGTTGATCGGGATGCAGATGATAAACTTCTATATATAACTCTCTAACTAACTTTTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 43759-42741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCFV010000123.1 Planktothrix agardhii strain PCC 10110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 43758 37 100.0 42 ..................................... TCCCCGTTCTTGCTCACGATGTGAGTCTTTATTGCATCCTGA 43679 37 100.0 43 ..................................... CATTTAACTCTCCTAGGTATTCAGTGGTTTGGAGATAATAGAT 43599 37 100.0 35 ..................................... ATAGGACAATATTCTAGGGTTACAGTATTGCCATT 43527 37 100.0 37 ..................................... CCTTTCCGGGAATCAGGACGAATAGAAATTAAATCCG 43453 37 100.0 41 ..................................... TCGGCTTTTCACTGGCATAGGGATAGGAGACTCTTTTAGTA 43375 37 100.0 38 ..................................... AGTTAGGATTAGGTCTAGCTACAGCCTACGCCATAAAC 43300 37 100.0 36 ..................................... TTGACCCCTCTGCCGAAGCCCTCGTCACCTTGAATA 43227 37 100.0 38 ..................................... TTGATGTCAGGAAGGTGGACTTGCCCATCACCGTTTTG 43152 37 100.0 39 ..................................... AGTATATGTCTAGCTTTGGTCAGTTCATGTCCAGATATA 43076 37 100.0 38 ..................................... ATTTACAATGGGAAGTCTAAAAAAAGAACGAGTGTACC 43001 37 100.0 38 ..................................... CTGCTGACTTGTTCATTAATCGAGTGATCTCAGGACGT 42926 37 100.0 37 ..................................... GCGATTAGAATTTCTAGCATGATGTTTATGATTGGTT 42852 37 100.0 38 ..................................... CAACGTCTTCAGCCGCCTCCACAACCACCTCCGGCTCC 42777 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 100.0 39 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACCCGCCACTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATGGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTCAGATCATCATCCATCACCAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAATTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 14557-15337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCFV010000057.1 Planktothrix agardhii strain PCC 10110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 14557 37 100.0 36 ..................................... AGCGCAAACGTTAAACGGAATGCCGCTAAGGGTAAA 14630 37 100.0 36 ..................................... GATAAAACCGATTCTCAAGTTGGTTCTTGTAGTCTT 14703 37 100.0 42 ..................................... CAGAATCTCGTGTAGAGCTTTAATAAGACTAGCTTGATTCAT 14782 37 100.0 35 ..................................... ACAGATATTTCCTCTGGATTAAATTGCTGTTCCTT 14854 37 100.0 38 ..................................... TAACGTTTGTCGCCCTTTGTTGATGTGGAATTTTGGAA 14929 37 100.0 42 ..................................... GATATAACAAGTTTCAAGGTAATTCAAAGCGTCTAAGGGTTT 15008 37 100.0 36 ..................................... ATAGATAGCAAGCCTAATCTAAAGGCTATATGGGAA 15081 37 100.0 36 ..................................... AGCGACGAACGTTGCCCACGGTTGCCACAAAGTTAT 15154 37 100.0 36 ..................................... AGCAACATCATGTAATAATCCATTGTTTCAATTCCT 15227 37 100.0 37 ..................................... AATTCATTATTGATTTAGCTAAACAGTTAGATATTGA 15301 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TATTTTCAAGTTCAATCTTAAAATGCGTAGGAAGATTGAAAAAAACTAGAAAAAACGACTTAAAGTTCCTCAAATTGTAAGTTAGATCAAAATTAGATGAAATTTAACAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAAGCATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAACAATTGGTTAATTCTTTCTTCTTTTCCTTTTCTTTCTTTAATTATTAACTAATGGTTTGAGCTAACTCCAGTGGGAACGCCATGGCTGTTTCATTAGCCAAAAGTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGATTTATTGTCGGGGAATGATAGCCATTGATTT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGAAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACACACCGCTTGTCAAGAGGAATATTCTATGATATTGCGATCGCCCCCAGACCTCTGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAATACTGGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 17657-16395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCFV010000069.1 Planktothrix agardhii strain PCC 10110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 17656 36 100.0 37 .................................... AAGGAAACTATCATGCACCTTCATAGTTTCCAAGTGT 17583 36 100.0 37 .................................... GCTTCAGTAGCAACCACTTCCAGTTCTTCGTCATCAT 17510 36 100.0 41 .................................... TAAGGTGTCAATGAAATCAGATTCTAAAACATAACGGTCAA 17433 36 100.0 38 .................................... GGAGGGTATTTTCTTCTTGCTGTTGCCGAATTTTTTCT 17359 36 100.0 41 .................................... TAGCTAGGACGAGCAATAGCTAAATTAGTCATAACTTCAGT 17282 36 100.0 37 .................................... TGCCTATCAATCCTAGAGACTGCGCCCATCGGGTGCG 17209 36 100.0 35 .................................... ACTCACATGATCCTTTTCTTCTCCTTGCAAATCAT 17138 36 100.0 41 .................................... TGGTCAAACACTTGGTTATTATCCTTAACTTGTACTAACTC 17061 36 97.2 40 .......................G............ TGATATGAGTACATCCTGTGTTTGTTGTTTAGCCCTTATA 16985 36 97.2 43 .......................G............ TAACGGGTTTTGATTGTTGAATCTGTTCCCAATAATTTAGGAA 16906 36 100.0 42 .................................... TATAAAGGGTAGCATTTGCTATCCTTTTGTCTTTCTCTTGTA 16828 36 97.2 41 .......................G............ GCCCGAAACATTAACTGATTGTCTCGGTTAATTTCTGCCGA 16751 36 97.2 43 .......................G............ TTGTGAATTAAATTATTGCTACCTCTCATCCCCTGTAATTCAA 16672 36 100.0 50 .................................... TCAGAATAAAAACACTATAAGAAGGATTAAACCCCTTCTTATTTTCTTTA 16586 35 88.9 0 ........................A-...G....G. - TC,C,G [16553,16556,16564] Deletion [16552] 16547 36 77.8 80 GCAA.A....C...............C...A..... ATTAGATTATTGTAAAAATCCTCATTGATTGGAAACGTCAACCTAATTCGTAATTCGTAATTCGTAATTCGTAATTCGTA 16431 36 77.8 0 A.T.A...........A.............C..TCG | C [16397] ========== ====== ====== ====== ==================================== ================================================================================ ================== 17 36 96.1 40 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : AACAGTTCTTTTAATCAAAACGTTGGAGCATATTGAGTTGATTCACTAGACTTAACAGGATTTGGCAGGTTTGTTAAATCTACGGATTTAACCGATGTGATTCTCTCAGCACTTAACTATTTACTGACTTTACCACCCTGTGATACCTTATGTCTTGGATTTCACAATATTTATGGTTTAAGTCACAAAACTCAATAATCCTTAAAAAATCTATACTTTTAGAGCAATATTGGCTGAATACTTACAATGAACTAGCGTTGAGCGATGTTGCTAATTGCCTCGTTAGTTCAATCTAGGGAACACCTCCCTATAGGTTTTTGCGAGGCTGAAGCTTGAATGTCTATGATATCGATTCTGCGGTTTATAGCCTCGCCAGTCCTTCCTGTAAGGGTTCTGACGTTTTGATTAAGGAGTAAAATCTTGTTTCAGCCGATGAAATTTCCGCAGCCTCGCAAACCCCCCCTAGACAACCGATGACGTCTGGGTTTAAAATGGGAGGA # Right flank : CACTAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTCCTCGGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGTTGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAAAGTCGGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTAACAAAAAGTGAATTCAAATTTTATTGAACCTTGCCTCCAGATTTGCTTTTAGAAAAATAAGTTTGAAACATTGCCTTAGCAATAGGGGCGGCGGACTTAGATCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCAGGATTTTGGGCGGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAAGTTCCGGTTTTCCCCC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAATTAGTTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 28565-29929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJCFV010000069.1 Planktothrix agardhii strain PCC 10110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 28565 36 100.0 42 .................................... GGATTTCCTTTGATGTTTGAAGCCTGTAATTTTCTGCCAAAG 28643 36 100.0 41 .................................... TTCGTTGTGGTTTTCATTGGATTTCTGTTAAGTTTATTCGG 28720 36 100.0 44 .................................... TAATTTCACTTTTTTTCTCCAATTACTTTCTTGTTTATATTACA 28800 36 100.0 35 .................................... TAATTTTTTGAAAACTATCTTCTCCCGTTAAAATA 28871 36 100.0 43 .................................... TTCCAATTAAGGAGATGTGGACGGTACATCAGCCAATGGGCCT 28950 36 100.0 38 .................................... TTCGCTAAGAACTAACTTAGCTTTATCCTTCTTTTCTT 29024 36 100.0 45 .................................... CATCTTTAAAATAGCCGATTGTTGCAGTAGTTATTGCTTTGGCTA 29105 36 100.0 48 .................................... TATTCAATCGTTAATACTGAAACCGGAGAAGTTTTAGGGACAAGTCCA 29189 36 100.0 37 .................................... CGCCAGGTGGCGATACCGAACGTCCGTCCGACACTGT 29262 36 100.0 52 .................................... CTGAAGAATAGATGCCACGCAGGAAAGATGTCAAAGGGAGGTTTTTCTTCAA 29350 36 100.0 42 .................................... AACATCTACTGTGGTGTCTGTAGTAGGGATGATTCTTTTTGA 29428 36 97.2 36 ...........T........................ TAAAGCAGAAGGAGCTAAGAAAGTAGAATTAAACAT 29500 36 97.2 48 ...........T........................ CTGCGAAAGCTGCTAAAAACATTGTGTTTTCTCCTAAAAAAGATTTAC 29584 36 100.0 43 .................................... TAAAGCAAGTCCAGATAGCACTCTGGTACTTTTTCGGGGTCAA 29663 36 100.0 39 .................................... AGTTGATGATTGAAGAGATGAAATTGAATTTGGTGTTGG 29738 36 100.0 42 .................................... CCCATCTTTTCCCGAATTACATCGCAGTGTAAACGCCGATCC 29816 36 100.0 42 .................................... GTTACTGGTTGCCCCGCAGTCTGTGCCGGGATATAAACGTAA 29894 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 18 36 99.7 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATATAAACCCTATGAGTTGCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCTTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGGAAGCGGGTTCAATATTCGGTTTTTGAATGTGTTTTAGCTCAATCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAGGTAAATCTAGCTGAGGATAATCTGCGATTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCTCTTATTATTTGATGTTTTCTGCGAGGCTCAGGTAAAATCGCTGTAATGCTGATTCTGTCGTTGGGAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATAAAATTTCTGAGCCTCGCAAACCTTATCTGGACAACCGATGACGTCTGGGTTTAAAATAGGGGGA # Right flank : CGCTAAGACAAAATTAGTCGAAGTCTTTCTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATCTAATTTTGGGGGACACCTCTACCGCAAGAATACTGTCCCCAGCCTGACGCTCTAGCAGTAAAGGCAATTCCCCAGCCGGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTAGTCGAAGTCTTTCTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTTCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTCTTTAACTTTTGAAAAACTCTAAAAATACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTCAATCCGATCGCACAAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //