Array 1 799-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXVO01000025.1 Escherichia coli strain OLC-1547 Cont0025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 798 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 737 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 676 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 615 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 554 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 493 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 432 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 371 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 310 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 249 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 188 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 127 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : GGCCAGGAATGCAGCATTTTGCATGGGAAATGAGAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39357-38291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXVO01000024.1 Escherichia coli strain OLC-1547 Cont0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39356 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39295 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39234 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39173 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39112 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39051 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 38990 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 38929 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 38868 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 38807 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38746 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38685 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38624 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38563 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38502 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38441 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38380 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38319 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //