Array 1 291545-291910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078552.1 Enterococcus thailandicus strain Colony540 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 291545 36 100.0 30 .................................... TTNNNNNNNNNNNNNNNNNNNNNNNNNNTT 291611 36 94.4 30 ..................................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 291677 36 97.2 30 ..............C..................... CAATNNNNNNNNNNNNNNNNNNNNNNNNGT 291743 36 97.2 30 ..............C..................... CAAAANNNNNNNNNNNNNNNNNNNNNNTGT 291809 36 100.0 30 .................................... TAAAATTACAATCAATTCCTCTTTGTTTAC 291875 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CCAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGACTATTTTGAAAGTAGTTCATAATCCACTGTTTTAGAGCTATGCTGTTTGACGGACAAACTCATCTGTTTCTGAAAGCAAGCAGTACAACATTCATACGATCAAATAAAAAAAGATGTAACAAATGGAAAAATAACAATGATTGAAGATGCAAAAAATTTTGAAGGAAATCCAGTGGTGAGGGTTATAGCACAAACAAGTAAAGAAGATGTCGGAAAGAGTGACACGCTAGGACGAAGCGATTTCCAGTTCCTAGGTGCTAATACTGAATGATTTACACTGCTACTTAGCAAATAGATAGGCAAAAAAAGTGTAAAGGAAGTATTTATGAAAAAGGTTGTTGTTACACTCATAATAATAACTACCCTTGTCGTAGGATTTCTTTTCGTAGGCGCTAAACATACAGAAAATCTACTACAAAATAAGGTTGAAAGTACCACTACAAGTGATGAAGAGGCAAATGACAGTTCAATCCAGTTCAAAATTATTGATTCAAATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1028020-1028584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078552.1 Enterococcus thailandicus strain Colony540 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1028020 36 100.0 30 .................................... TCGCACTGACGACCATATCTACCTTTGATA 1028086 36 100.0 30 .................................... TTCAAAGATTTTCTTTTCAACTGGTGTGTC 1028152 36 100.0 30 .................................... AAATAAAGTAAAGGAGATACTATCTAAGTA 1028218 36 100.0 30 .................................... TAATACTTGTTTAATGTTTTGCGCCACCCA 1028284 36 100.0 30 .................................... CGAGGTAATGGAGTATTATCATGCTAAATA 1028350 36 100.0 30 .................................... CGAGGTAATGGAGTATTATCATGCTAAATA 1028416 36 100.0 30 .................................... TCCTGAGTTCGCAGAAGGAATACTTCGACC 1028482 36 100.0 30 .................................... TTAGTTTCACTCTTGCATTTAATGGAAAGC 1028548 36 88.9 0 ..........................T.A.....TT | G [1028576] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.8 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : CGTGATCCACGTGTTGAAAACGTAACGATCACGGATGTACATGTAACAGGTGATTTGCAACAAGCAACCATCTATTACAGCATCTTATCTGATCTTGCTTCAGATAAGAAAAAAGCTCAAGAAGGTTTGAGTAAAGCAAGTGGGCTCATTCGTCGTGAATTAGGTCATAACCTAAGCATTTACAAGACACCTGAGCTAATCTTTGAATTAGATGAGTCTGTCGGCTATGGTAACCATATCGACGAGCTGCTGCGTAATTTGAATAAGGACTAAACAAAAAGAGTAACAAACCTGGTATATCAGGTTTTGTTACTCTTTTTTTATTTAGATTAAAAAATAAAAATTTATTCGCAAAATTATTGGGTAAGTAGTTCCTATGTTATAATGAACAAAAAAGACGCTCTTTGAAATAAAAATATTCAAGCTAGATGAGCATTCAAACTGAAGTTTTGCTATGAACGAATAGTGCGATTACGGAACCTCAAAAATTTTTAGCCGAG # Right flank : TGATAGAGAAATTAACCAAAACATTACCCATTTATTGGGTAATGTTTTTTTGTTATAATGAGGTGAATGTGGTAAGAGATTTTCTAGAAATTTTTGTATCTTTTGGATTGATAAAAAAATAAAAGGATGTGGCGATAATGAAAAAGATAATTGGGTTAAGTGTGATTGGCATGACTTTGTTTCTTGCTTCTTGCGGGAAAAATGAGCAAGTAACTTCAAGTAAAACGTCACAATCGACGGTTCAAACGAGTGAAACAACAACAACAACGACTGTCTCAGAAACGGCAACAAGTGATTCAAACACAGAAACAGTTGTTGAAGAAACGAATTCAACTGTAACGACAACACCAGCGAGTTCAACAGGTCAAAGTACAAATGCATCAGCAACAAACTCAACGAGTGAAATGCCTTCCTTTACACCAGAACAAAAACAAGCACTAGATGCTATTTACGAAAAATATCCAAAGTATAAGGATTCAGATATTGCTTTTATCTTTTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 1281532-1281765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078552.1 Enterococcus thailandicus strain Colony540 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1281532 36 100.0 30 .................................... AAAACTNNNNNNNNNNNNNNNATAGTAGCA 1281598 36 100.0 30 .................................... TGAGAGTAAAACAGCTTCATCATGTGTTTT 1281664 36 100.0 30 .................................... GCAANNNNNNNNNNNNNNNNNNNNNNAATT 1281730 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TCTGTTCAACTATTTTTCGATCCAACGACCCATCAAATTTTGGGTGGAGCTGTGTTATCAACTTATGATATTACTGCTCAAGGAAATGTGTTAGCTTTAGCAATCCAACAGAAATTAACATTAGAAGATTTAGCTGAGGCAGACTTTTTCTTCCAACCAGGATTTGACCGTCAATGGAGTCTGTTGAACCTAGCAGCACAACATGCTTTAGCTGAAAAAGAATTTATTGAATAAAGCGAAAATTGAATCAACCTCCAAAAGTAGTCAAATGGACAGGCTTTTGGAGGTTGATTTTTTCATTTACAATCAAATGATAGCCAGTATAGTGAAAAGCTTATTGTTTTCCAACTATTTTCGTTGCAAACAAGGTTTCATGCTATACTAAAGAAAAGTGTTCCTTGAAATAAGAATAACCAATGACGTTAACGAAGAAGCATTCAAACTGGAGTCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAACCGAG # Right flank : CTGAACTAANNNNNNNNNNNNNNNNNNNTTGGTTTTAGAGCTATGCTGTTTTGAATGCTTACTTTTGACTGAAACTGTCATTGTTTTAGTATGTGTTTATAAAAAGTAGCAGAAAGAATACGTGATATTGACTCAAGAATAACTGATGATAATTTGCAGTAAAAAAGAACGCAGTTTCATGTAGTTCCTTAAAAGTAGGGAGCTATTCATGAAACTGCGTTTTTTTGATACCTAATTTAATTAACGAATAGTACCTAGAAACATTTCAAAATTTTGCGTATCAGCTATTTTTTGTTGTAGTTTTCGGTCTTCTACAAGATCAGATAAATACTCAAAAAAAGCTTGGAGTTTGTCTTTGTCATCTTCAGCAACGGCAAGTAAAAAGATGATTTTTACGGTTGCATTCGGACGCCAAAAAATCGGTTCTTTTGAGATGTAAACAAAAATTTTTGTTTTCTGGATGGAGGCATCAATAGCATGAGGGATTGCGATCAACTCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 4 1295801-1295501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078552.1 Enterococcus thailandicus strain Colony540 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1295800 36 100.0 30 .................................... AATGCNNNNNNNNNNNNNNNNNNNNNATAA 1295734 36 100.0 30 .................................... GANNNNNNNNNNNNNNNNNNNNNNNNGTAG 1295668 36 100.0 30 .................................... TGCTTAAGATGTAATGATGAAACCGTCATT 1295602 36 100.0 30 .................................... TGAGATTCAATTTTTAGATTCAAAAAGTAA 1295536 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TTTATTCGAGACCACTTAGCTTATCTTTGGAAAGCAATTGATGACGGCTGTAACATCAAAGGTTATCATTTATGGACATTTATTGATTGTTGGTCATGGATCAATTCGTACAAAAATCGTTACGGACTAGTTTCCTTAGATCTACCTACTCAAAAAAGAACAATCAAAAAAAGTGGCGAATTTTATAAAAAACTAAGTGATGAAAATGGATTTAATTATGATATTGATTTGTTAGTTCTTTAAACAATTATATCACTGTAGCTCAGACTCATTCAGCAACCAAAAACTGGTTATGACAGAAAGTCAGTTTATGCTATACTAAAGAAAACTGTTCGTTGACATTCAAATAGCCAACATATTACCAAATAAATAGAAAGAAGCATTCAAACTGAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAGCCTCAAAAAATTTATCCGAGGTTTGTTTTGAATGCTTCCAAAACTTTNNNNNNNNNNNNNNNNNNNNNNTTAGT # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNACGTTTTAGAGCTATGCTGTTTTGAATGACTGGCTAAATATATGATAAAAAAGGACCGCCCATTGAGAGCTGGTCCTTTTTTTGTTAAATTTTTTGATCAATTTCAGTGACAGTTATTTGTAGCACACGGCTTAAGAACGGAAACTTTTCCTTCATTTCATTAAAAATTGGTCCCTCTGTGATAAACTCAGCGGTTCCGTGCAAATGGAATCCTGCACCAGGCCCTACTGTACCAATGACTTCTTTGCTTCCAACGGTTAACATCACTTGATTATTTTTTTCGATATCTTGTTGAACACTGTGCATCCCAGCTGCAGGAATATATAATTTATCGCCACTGATTTGAACATAGCTATTCCAAGTATTCACAGCATGAAAGCCCGGAGCATTTTCACTCGAAGAAATTATTGTTACTGCTCCCTCATGTCTCATTACCTCTAAAAATGTTTCATTCATCATTTTGCAGACCTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //