Array 1 1056-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMT010000163.1 Clostridium perfringens strain CP-20 163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1055 30 100.0 35 .............................. CTTTGAAGTGTTTTAAATTCTTTAATTTCCTGTTT 990 30 100.0 35 .............................. CCCTGTTCTGCATTTGTTATTGAAATGTCTGAAGA 925 30 100.0 36 .............................. ATTTAAAGCATATTTTTTTACTATGTATATTTCAAA 859 30 100.0 36 .............................. CCTTTTATTGTTGCTGCATAACTTCCCATAATATCT 793 30 100.0 34 .............................. TTAATATTGGTCTTGTTATCTTTAAGATTCATGG 729 30 100.0 35 .............................. TAGTTTTGGAGATCCAGTCTATACTATTAGTAAAA 664 30 100.0 34 .............................. ACATCTGTAAATGTTTGATATGGTGCTCCCTTAC 600 30 100.0 36 .............................. AGCTTTAAGACCGTGTATATTTAATAGTGTATATAT 534 30 100.0 36 .............................. GAGGTGACTAGAGATATCCATAGCAGACATCCTGAT 468 30 100.0 36 .............................. AAGATGCTATACTAGTATCGTGGAATAAGAATGAAG 402 30 100.0 36 .............................. TGTTTTATCCATTCATTTTTAGCAATAAATCCATCA 336 30 96.7 36 .......T...................... ATGATGGCTTTTTAGTCCTTGTACTAGATATTAACT 270 30 93.3 35 .......T........G............. AATTCCTCTTGAGCTGCTTTTATCTTTGATTCTTT 205 30 93.3 36 .......T........G............. TAAATTCCATATTAATCATCTCCTTTGATTATATAT 139 30 93.3 36 .......T........G............. CTACTTATAACTACAAGAACTTTCTAAGGTTATCTA 73 30 100.0 0 .............................. | TT [46] ========== ====== ====== ====== ============================== ==================================== ================== 16 30 98.5 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAATAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAGCTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTAAATCTTAGTATTTAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATCACCTTTCAGACCTTGCAATAACTAAATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGACACTGAAATAACTAGCTTAAAGATAAATATAAAAACAAAGAAATGGCTATTTTACAAGC # Right flank : TAAGAACTTTAAATATTAAATTGTTGAAATAGGTATATTGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 33267-31926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMT010000011.1 Clostridium perfringens strain CP-20 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 33266 30 100.0 35 .............................. TTAAAGTTTGCATACTTTAAATCTTCGCTTCTTAG 33201 30 100.0 34 .............................. CTTGTTACTAAAGCTGAGTAAGTATTAGTTATGA 33137 30 100.0 36 .............................. TACAATAATAACAAGGTGGATTAATTTCCACCAACC 33071 30 100.0 36 .............................. AATGCTCCTATATGGTCAGTATGCGCATGAGTAGCT 33005 30 100.0 36 .............................. CCTTTTATTGTTGCTGCATAACTTCCCATAATATCT 32939 30 100.0 36 .............................. TTAATTCTTTTTTCTAATTGATTAGCATCTGCACCG 32873 30 100.0 36 .............................. TAGAATTTATAAATAGCTTCTATATCTTTTTCAAAA 32807 30 100.0 36 .............................. AAACGTTATTGTAGAGCTTGAAGAATTTATTTTAGA 32741 30 100.0 35 .............................. AAAGAATCCTTTGATTTCTATTCAAATTCAATATG 32676 30 100.0 36 .............................. ATATATAAGTAATGGAGATATATTCCAACTATTTGA 32610 30 100.0 37 .............................. ATAATCCGTTTTTGTCCATGATTAAGTCTTTTTCTTC 32543 30 100.0 36 .............................. ACTGACTGTCCTGGTAACTTAGATTTAGACAAGTTA 32477 30 100.0 36 .............................. TTCCCAAGTTATTAAAGCTTAGCCAAACATATTTAT 32411 30 100.0 36 .............................. GAAAATAAAAAAGAAATACATATAATAAGCTATGAA 32345 30 100.0 35 .............................. GCCGAATTAAAAGTAGTAGGCGAAAATATAATTAC 32280 30 100.0 35 .............................. TAAACCTCTCTAGCTGTAATAACAGCTACTTCTCA 32215 30 100.0 36 .............................. AAGCAAAACTTTTAATTATATCTTTCTTATATACTT 32149 30 100.0 34 .............................. AATGTTTTGATTAAAAGAACATTAAAAGATTCTA 32085 30 100.0 34 .............................. AATGTTTTGATTAAAAGAACATTAAAAGATTCTA 32021 30 100.0 36 .............................. TTCTACACATTACCAAAAGAAGAAAGATTAAAGGAT 31955 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTCAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAATTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : ATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGCTTATGAATCTTGGAATGGCTTTATTTTTAAGTTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGCTTCATGTCTTTTTGGCCAGTTTCATATTTACTTGATGAAAAGGACAAGGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTGCTCTATTATTGTATTAATTATTTATATATTAAAGAATTATGATAGAGTTAAAAGCTAGTAATATAATCAAAAGCAATATAATTTAAAAAATATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //