Array 1 119711-120776 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBL01000005.1 Salmonella enterica subsp. enterica serovar Indiana strain 56-2070 NODE_5_length_245795_cov_3.08173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119711 29 100.0 32 ............................. TGTAACCACTGCGATATGGGCGATGACACAAA 119772 29 100.0 32 ............................. CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG 119833 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 119894 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 119955 29 100.0 32 ............................. ACGATCCAGATATTTGGCTGGATGCAATCGGT 120016 29 100.0 32 ............................. CCCCATCGGTAACCTCTCACTATCGGTGTGTC 120077 29 100.0 32 ............................. GCTTTTATGTCTGGTGGATATAACGCACTGAA 120138 29 100.0 33 ............................. CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC 120200 29 100.0 32 ............................. CGTATCCCGAAATCACGTTCAAGAAAAATCCG 120261 29 100.0 32 ............................. CCGTTGATCAGAACGGCAACGAACGCACGTAC 120322 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 120383 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 120444 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 120505 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 120566 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 120627 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 120688 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 120749 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137318-138691 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBL01000005.1 Salmonella enterica subsp. enterica serovar Indiana strain 56-2070 NODE_5_length_245795_cov_3.08173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 137318 29 100.0 32 ............................. AGCACACATTGTGTGACGGTCGCCGTCTGGTT 137379 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG 137440 29 100.0 32 ............................. GGCGACGGGTTCGTCCGACCGCATCCGGGCCA 137501 29 100.0 32 ............................. CTTGGAACCATAAAAGATGGGCAAATAGTGCA 137562 29 100.0 32 ............................. ATTTTATTAGCGACTATCCAGGAATAAATTAC 137623 29 100.0 32 ............................. GGTGTTACTGATGGTGGGGCGCTGGATGAGGC 137684 29 100.0 32 ............................. AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA 137745 29 100.0 32 ............................. AGTGTCCACACTGCGGCGCTGAAAAATGCAAC 137806 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 137867 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 137928 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 137989 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 138050 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 138111 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 138172 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 138233 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 138294 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 138356 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 138418 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 138479 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 138540 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 138601 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 138662 29 100.0 0 ............................. | A [138689] ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //