Array 1 9255-12944 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWU01000004.1 Photobacterium halotolerans strain P44_P4S2P179 scaffold80_size19738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9255 28 100.0 32 ............................ GGATCGCGGAGGCGTTCGGACTGCATCGCGAC 9315 28 100.0 32 ............................ CAAGCCAAGCCACGGATGTTTTTATCTACGGG 9375 28 100.0 32 ............................ AAACGGTAAAACGAAAAAACTACTGATCAACC 9435 28 100.0 32 ............................ ACAGGGTTGTATCCGCATTTCTGGATAATCAG 9495 28 100.0 32 ............................ ATGAATCAGTAGCGTAATATCCAGCTGATCTA 9555 28 100.0 32 ............................ TGAAAAATGGCGGCCTGTCTCTGGGCACTCCT 9615 28 100.0 32 ............................ AGTCGATTTCGGCGACATAGTCGGCTGCTTTA 9675 28 100.0 32 ............................ AGACCCCAACAAACGATACACGCACACAAGAT 9735 28 100.0 32 ............................ TCTTCCATTTCTTCCAGCTCAGCGATCACGTT 9795 28 100.0 32 ............................ ATGATTCGTGCGATTGTTCCCTCCTGTGATAA 9855 28 100.0 32 ............................ ACTGGCTTCGACTGCCCACAAATTGACACCAG 9915 28 100.0 32 ............................ TTTGATGGTATTGCGATGCGTGAAGTAAACCG 9975 28 100.0 32 ............................ TGAACAATCGTTACCATCATCACCCCGGACAA 10035 28 100.0 32 ............................ TTGCCTCCTGATACGTGTCAAAAGAAAGGATG 10095 28 100.0 32 ............................ AAGCAGTAAACCATGAATATCGGCACCTTTGT 10155 28 100.0 32 ............................ AACCCTAGATAGTGTGTGACGAAACTCACAAA 10215 28 100.0 32 ............................ AGGTCATGAATGCCATGATCATCAGCCATCTT 10275 28 100.0 32 ............................ ATTGTCCGGGCTTTTATTGAAAATAACTATCA 10335 28 100.0 32 ............................ ACAATACGCAGTTTTACGAACCGGCGGTAGCT 10395 28 100.0 32 ............................ GCTATCTCAAACCAGTTCGACTGGAATATGTC 10455 28 100.0 32 ............................ TGCCGGTCGATTTCGGAGACGTCGTCGGATGC 10515 28 100.0 32 ............................ AAACGATGACTCACGGTGTCAACATGAAAGAT 10575 28 100.0 32 ............................ ATGAATCACTACACGCAATTTGAAGACGCGAT 10635 28 100.0 32 ............................ TCACTAATTCCATCGATTCATGGATTTGTGAA 10695 28 100.0 32 ............................ TTGCGCGGGCGGCCCTTGCCCCGGCGCTTGAG 10755 28 100.0 32 ............................ TTAATGGTCTGTTTTGATTATTGGTCTGATTC 10815 28 100.0 32 ............................ TGATGGATACATCGTTGCAAACAGAGATATGT 10875 28 100.0 32 ............................ ACCACTGGACTCCTCGAAGTCGGCGCGGAACT 10935 28 100.0 32 ............................ GGAGAGACCAGCACATACGCTGATGACCAGAT 10995 28 100.0 32 ............................ AAGAAAAAAACCTGTTCTTCAAAATGCCGAAA 11055 28 100.0 32 ............................ CGATAGGCTCCCGTTTTGAGTTAGGTTTTTTA 11115 28 100.0 32 ............................ AGGAAGAAGACAATCGTAAAAAGCGTATCAAG 11175 28 100.0 32 ............................ CGATCCGGTTGTGAAAAAATCAGCCCCTGGCT 11235 28 100.0 33 ............................ ACAGACAGGTCGTAATCGTTGTCGATGAAAAAC 11296 28 100.0 32 ............................ GATATCATTAACTGGGTTAACGATGGGCGACT 11356 28 100.0 32 ............................ GGTACATGTCGCACATTTCCTTTACAACATCT 11416 28 100.0 32 ............................ ACAACGTAGGCTTCAGCGTGCCGGTGGCCAGC 11476 28 100.0 32 ............................ TGGCCGGCATTCGATTCAACCAGAGTGATTTC 11536 28 100.0 32 ............................ TTTGGTGCTTATGCACCGTCTCTTGCGAGCTT 11596 28 100.0 32 ............................ AATAAACTGTAACTCCCTCTTCCCAGTTCTGC 11656 28 100.0 32 ............................ TGTGCGCATCTTCCAATAACGGTATTGTAGCT 11716 28 96.4 32 ...........T................ ATCAACCACAGCAGGAGATAGTCATGAATCAC 11776 28 96.4 32 ...........T................ TTAACCTGAAGGGGGTTAAGGTCTCCGCTCGC 11836 28 96.4 32 ...........T................ TGAAATTCACGCCAGGCAATTTCACCGGCCTC 11896 28 96.4 32 ...........T................ TCAAGCGGTGGCAGCAACTAGCCCCCTCGGTA 11956 28 96.4 32 ...........T................ TGGCGTAGAGTCGATTTATCGAACTCTGGGGA 12016 28 96.4 32 ...........T................ TCGAAGTATTGATGAATTGCAATGGCAATCTC 12076 28 96.4 32 ...........T................ TGAGAAGAGTTGCCGATCTGTTTAATTTCAAA 12136 28 96.4 32 ...........T................ TAAAACGCACATGTTAGTGTTGCATTCGTTTT 12196 28 96.4 32 ...........T................ TGTTAGATAAAAGGCGCTATGAATCCCCGCAC 12256 28 96.4 32 ...........T................ TGGATAGCAACATCGCTCATAAGGTCAGAAAA 12316 28 96.4 32 ...........T................ GCACGCATGGGTGACTTATCACTGGCTGAGGC 12376 28 96.4 32 ...........T................ GCACCATTGGACACTTGCTTCATGTCCCAGGC 12436 28 96.4 32 ...........T................ TGAAAAGTGCGGAACGCGCTATCGAATTGAAT 12496 28 96.4 32 ...........T................ TTATCGTGAAGATGCCCGTGTATGTTGGCGAC 12556 28 96.4 32 ...........T................ AGCGCGAACCACTTTAACGATCTCGTTAAGCA 12616 28 96.4 33 ...........T................ AAGAGTTTGAGTAAATTTTACAGAGATAATCAA 12677 28 96.4 32 ...........T................ TAATGCAGTTGCGCCAGATAAAACCGATGAAC 12737 28 96.4 32 ...........T................ TGCCAAACTTCAGTGAAATGAGTGAAGAGCAC 12797 28 96.4 32 ...........T................ ATTGCCGACGGTGACCACTCAAGATCATAACG 12857 28 100.0 32 ............................ TGTCGGATGACAAAAGAAATGTTCAGCGCTGC 12917 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================= ================== 62 28 98.8 32 CTTCACTGCCGCACAGGCAGCTAAGAAA # Left flank : TCAGCTAATGTCACTACCCTGGCTGAAAGGACTACGTGATTACACCGAGGTAAGCGCATTACGCGAAGTACCTGCTGACATCAAGGGATACCGCAGTGTTTATCGGGTGCAGAAAAAGTCGGTTAATAATCGCCGCAAGCGTTCGATTGCTAAAGGTTGGCTATCAGAAGAAGAGGCAATTCATCGTATCCCGGATGAAGCGCAGCAAACGTTGAAACTCCCCTTCTTGCAGTTCAAAAGTTTGTCGAGCCAACAAAACATGCGGATCTATGTCGCTTTAGGTGAGCTACTTTCTGAGCCAACAAAAGGACCAGTGAACAGTTACGGTTTAAGTCGTTCAGCAACTGTGCCTTGGTTCTAGTCTCCCTAACCCCTTTTTTTTTCTCCCAGTCATAAGTGATTGATTTTCTTTTATCGCTAGGGTGTTTAATCAAAAGGGGTTTCTCGATAGGTTGCTTATAAGCTCTTTAAAAATATGACTTTATACCATATTATCTTCA # Right flank : AATTCATGGTTCTTAAGTTGATTTAGTTAACAGCGCCTTAAACCAGTATATTTAGATGCTGGTTTAACTATATTAAATAAGGACTCTTATCCAACTTACAATTATTTACAAAGGCTCTAATTTTTAGCTCGATAATGAATGCACTTAACCTTACCTGACCCTGTATGATATATCACTTGAAAATAATTTTTTTCAGACATTATAAATTTATCCCAAGCTCCAACCTTGTCTAAAACAGGTACCACTTGTTCTAACATTGATTCGGATGGATTGCCTATTAAAGCATGTATCTCTTTACGGTCGTCTATGCCTTTTAATCCCTTCAGAAAATATTCCGGTTTATAAGCGATAATTAGATTTAGTTTCTTATCTTCACTAGAAAACTGAAATTCTAAACCACGATCAAATAACTCGATGTAGAACTTATCATTATAGCCATCAATTCTAGAAGGCACATTCCCCCCAATCAAAGATGCAAAACTCGGCTCTTTGACCAACTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTAAGAAA # Alternate repeat : CTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCCCAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //