Array 1 50763-52559 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDCH01000002.1 Chlorobaculum thiosulfatiphilum strain DSM 249 NODE_2_length_174999_cov_14.0223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 50763 28 100.0 33 ............................ TCACAGACCACGCTTTTCTCAAGCCTGCTGTAG 50824 28 100.0 33 ............................ TCTTTACTTTTACCTGCCGTGAGCGAGCGCCAG 50885 28 100.0 32 ............................ TGGATCGAGCTTGGTTGTTCCCGGCACTTGAG 50945 28 100.0 33 ............................ CCGCCGCGCCATCGTGATCGCGTAGCAGTTAGC 51006 28 100.0 34 ............................ CGAGTTGCCCTACGAGGCGTTCTCCGGCGGGGCA 51068 28 100.0 33 ............................ CGATACGGTATCGCCGTTGATGACCTCGAAGAG 51129 28 100.0 33 ............................ TTACCTCCGTCTCGCCATTCGCCACGCTTTTTT 51190 28 100.0 34 ............................ CACATAACCAGCCCGGCTGACAGGGTTGGGCGAG 51252 28 100.0 33 ............................ TTACGAATCCATTTCATTCTGCGCTCTCCCATG 51313 28 100.0 33 ............................ TCTCAGGATATGATTGATAAGGGTACCGTAATC 51374 28 100.0 33 ............................ CGTCACCGTCAAGGCAATGGCTGTTGGTGCTGC 51435 28 100.0 32 ............................ CTACTCAGAGGATGAACTGCGTATGCGTAGAG 51495 28 100.0 33 ............................ TTGCCCGAGTTCTCGTGGGACACGGACGGGCAC 51556 28 100.0 34 ............................ CCCTATGGGGACGCCCGCCCGTCGCAGATTCTAC 51618 28 100.0 33 ............................ CTACGAACGGTTTGGCCAAATCCTGAGTATTGA 51679 28 100.0 33 ............................ CATGTCGGCCTGAATCTCTCGAATCCGTGCTGG 51740 28 100.0 32 ............................ TTCTTTCTGCTTCATGATCTCTCCTCTTTTCG 51800 28 100.0 33 ............................ TTCGGTGCTCGAACAGACCCCGCGCCTCGCGCA 51861 28 100.0 34 ............................ CCCAGTAGCGTGTCGGCCTGAATTCGTGGCCGAG 51923 28 100.0 33 ............................ TGACCCGGAATTTTTCAGCTCATGGATTGATCG 51984 28 100.0 33 ............................ CGTCGCGCCAGTTGCCGACACCGAGTACGATGA 52045 28 100.0 33 ............................ TTGAGCGTTCAACCGGGAATCCATGCCGGTAAG 52106 28 100.0 33 ............................ TAAATCCGCCTTTCTCCTGATTCGGCAAATGGC 52167 28 100.0 33 ............................ TGTATCTATCGTGCGAAGCAGCTCCTTGACCTC 52228 28 100.0 33 ............................ TTTGATATCGGTGATCTCGCCGCTTTCGATCTT 52289 28 100.0 33 ............................ CTCGTTGACGGTCGCGGACTCAGCTCTTGTAAG 52350 28 100.0 33 ............................ CAGGTCTTTTACAGCTTTGAACACCATTCAGCA 52411 28 100.0 32 ............................ TATTGAGCACTCGGTAATCGGCTGGCTTGCTG 52471 28 100.0 33 ............................ CTTCTGATTTCTACCCGTCCGCCAAGATAGGTT 52532 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GCACGTCTCCATCGAGCTGGCTTTTTCGCTGACCGCCGCAATGGCCGGGTATTACGACCGGTACAAGATCGCCACGGAGTTCCGGCGGCGGGTGATCGAAATCGACCTGCTCGGCAAAATCGGGCCGGATATTGAAACCATTCTCGGAAAAAAGCAATGCTCGTTGTAATCGCCAATGACCTGCCCCCGGCTGTGCGTGGCCGGATGAAGCTCTGGTTCATCGAACCCAGGGCGAACGTTTTTGTGTCGGGCGTGAGGGACAGCCTGGCCAGAAAGGTGGTGGACTATCTGCACGAGCACTGCCCGCCGAAAAGCGGCCTGATGATTTTCAACAGCTCGAACGGGTGCCCCGGCTACGAGATTTTCGGCATGGGCGACACGCGCAAAGCCATAACGGAAATCTCCGGCCTACCGCTCGTGATTGAAAAATCCGCCGCCTCGCCACCAGAAAACCCAAACAGCTTGACGCCAGACGTCCCGAAACCCCAGTAAAACCCAGT # Right flank : CGTTGCAATACGTGGACAGTGTGGACGATGTGGATGGTCGGGCGATGCGACTGGAAATGGGGGAAGTTGCTCCGCTCGGGCGAAGTTGAGATTTGGCGGGGAAGGGCGAACACACAGGTTCGCCCCTACAAAGAAGTCAGGAAACCCTTACAATCTCGTGCCGATGCCGAGGAGGTCGGCGATGTTGGCTTTGGGGTCAATGACGGGGCGGATGGCGGGGGTGGCGCTGGTCATGATGGTGGTGACGCCGGGGCCGTGGCCCGCTTCGCGGCAGTCGCTGTGCACCACCACGCCGACGGTGACGGCGCCCTTGCGGTAGGCTCGCCCGTAGCGGTTGTCCTGGTCGAGCAGCGCCACGAAGTCACCGAAGCGGATGCGGTCGAGGCCGAACTCGCGCACGGCGTCGGGGTCGCTGGTCACGATGTCGTAGTCGCCTTTCGCCACGTGCGCCGAGCCGATGCCGGAACCCATGCAGTAGGCCGGAACCACCGTCGTCACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 155052-154499 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDCH01000001.1 Chlorobaculum thiosulfatiphilum strain DSM 249 NODE_1_length_321802_cov_13.437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 155051 35 100.0 39 ................................... AATACCTGTTCGATCGGACTCATAACCCGCATTACTTCA 154977 35 100.0 39 ................................... TTTTCAGGTAAGCGCCTACCCCTGCAGAGATGCCGCCAT 154903 35 100.0 39 ................................... CAAAGCACATGTCGGCCCAGAGGTCAAGGAACCATTTCC 154829 35 100.0 36 ................................... TTTTAGCGATTCGGTCGTAGTGCCGTTATAACAAGA 154758 35 100.0 38 ................................... GCATGATTGAATGGATCTTGGGTTATTAAGACTACAAC 154685 35 100.0 41 ................................... TGTCTGCCGACAGGCTCCACATCGCGGCCACATCGTGCCGG 154609 35 100.0 41 ................................... GTCATGGCCATGTTCAGCCAGTCACCAAAGATCACCTCATG 154533 35 80.0 0 ..........T..................GTTTTT | ========== ====== ====== ====== =================================== ========================================= ================== 8 35 97.5 39 CTTTATAGCTAATTGCACTCGCAGAGGATTGAAAC # Left flank : GGTTCTGCGGAGGAACCATCTTGCGAACGTTCAGCGCGCCCTTTTCGCCGTTAGCAGCTTTGCCCGATACCTGACGCTCTTGAGATTCCGCTCCGGCCACGCTTGTTTGTACTAAATGGTGATGAAAAGAGTTACGGCGTCAAAAATAACACCATAAAACGAAACAACAGCACACTTGCCCGCAAAAAATCAGCGCGACGTGATCGCCGGAACCTGCACGGAGTACCGTCCGTACCGGTTAAAATGGTAAAACCGCAGCTCAGATTTTCGGATGGTGAAAAATGCCGGAAAAAGGCATTAACTGCTTTTGGAATAATGGGTAATGGGAAAAAGTCGGAATCATTGAGCTGCGGTGCTTGCATAAGTCATTGAAATTGCATAACCTACAGAGGCAGTTCAGTAGTACAATCAGACCATTGTCCCTTGTCATCGCTGATTTTTCCATGAGCTGCGGTTTTCGCGCCCGCAGCCCTTGCCAGTCAAGCGTTTCCGGGGGTACT # Right flank : TAACAGTAAGGTTGTATTTCTTATTACAATTTTGACGAAAACTTGCTATGCCTGAATTGCTGACACAGAATAATCTGATGTTTCTGTTTGCATTTACAGCAGGAATGGTTTCTATTATTCAGCTTCTTGAATACCTGGTTACAAAGAACATTCCTTGGCTATGGCGGATTGTTCGGCAGCTCTGGAGAAAAATCAGGCGGAGTATTGGCAAAAAAGGGGATGACGGTTATGTTCAGCGCCATATTCTAAACTTTTCAGGCCATCCTGTCTCGTCCGGTCAGCAGCAGGCAATCGAAAAGCACATGCACTGGACCTCATCCAGCGTGGTGGATGTGCGATTGGGGAATGTGCCCGAAGACAACAACTTTGCAGCCGCAATCACCAAAGCCATCGAACGCGCCGGACTCTCGCGCGAGGAGTGGCAAACGATTCCATGCGTGGCCGTGCCCGCCGGTTATCCGGCAGTCTGGTCGGTCATCCTCGCCGAACTGCACGGACGG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAGCTAATTGCACTCGCAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //