Array 1 15657-19586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWC010000070.1 Aggregatibacter actinomycetemcomitans strain CU1000 833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15657 28 100.0 32 ............................ TTTAAATGTCAATCAAGGTGAAATGTTAAAAG 15717 28 100.0 32 ............................ TTATGGTTATTTTCCCGCCATTAAGACGGGAT 15777 28 100.0 32 ............................ TTTGTAGGCAGTAATTCTTCAAGGCCATCTGC 15837 28 100.0 32 ............................ TTGAATTAATGTAATAAATCATATAATTGGAA 15897 28 100.0 32 ............................ TGTGGATAACTTTTCAAAATCTTCGATCGAGA 15957 28 100.0 32 ............................ ATAAATAATGAGCGTCGCACATTACGCTTTGA 16017 28 100.0 32 ............................ ATCACCAAGGACGGTTTCTTAGTTGTGCCGGC 16077 28 100.0 32 ............................ GAAAAAGATAATAAATCAGAAGGGTTTCCTCT 16137 28 100.0 32 ............................ TCACGAGGTATTTCATGGGCTGAGCGCTTACT 16197 28 100.0 32 ............................ AAAAATTTAAAAACATAAATTCATCGAATTTG 16257 28 100.0 32 ............................ TAAGCCCCAGTTATTAGCATCATTCTTTTTAT 16317 28 100.0 32 ............................ ATCATTCTTTTTATATTTTCGACACGGAATTT 16377 28 100.0 32 ............................ TGATAATCCGATTATGTATGATTTGGCTATGA 16437 28 100.0 32 ............................ AAATAGTTTTAAAATGAAAAATACACCTGATA 16497 28 100.0 32 ............................ ACATCGCGCCCACAACAACTTATTTCAATAAA 16557 28 100.0 32 ............................ AATGCCTGTTAGACCCAACAAAACAAAGTAAT 16617 28 100.0 32 ............................ TTATCCGTCTACTTTAGCTTGCGAAGATGAAG 16677 28 100.0 32 ............................ TTTATTCGTTCCAATTCGCTCGCTACCATAAT 16737 28 100.0 32 ............................ TAAGCGCACCCAAGTTGAAATAGATGTTAGTA 16797 28 100.0 32 ............................ AAAAGCAATCGCATGCTCCGCAACTGCAAAAA 16857 28 100.0 32 ............................ TATTCGGCAGTGAAGGATGACAAAACTACACA 16917 28 100.0 32 ............................ ACGCCCACCAAAATCAGACATTGACGAGCTTA 16977 28 100.0 32 ............................ TGACGGTAATTGTCCTTTAACAATAATATGCA 17037 28 100.0 32 ............................ AAAAGACAGGCTTGGATAAATTCGGAACAATC 17097 28 100.0 33 ............................ AATAGCGCTGTCATTTGTGCCTGTGAAACCTCT 17158 28 100.0 32 ............................ TTGATGAAATCGACTAACTGCGTCGCTAATAG 17218 28 100.0 32 ............................ ATATCAGCCCAAATATAGTGCCAGTTGCAATA 17278 28 100.0 32 ............................ TATATCTTTTTGTCTTAATCCTGCTGAAAAAA 17338 28 100.0 32 ............................ AATGCAGAACGTTTATTCCAATTTGGTAATGT 17398 28 100.0 32 ............................ TTCAACATTCTACGATTCTTTAACCGATAGCC 17458 28 100.0 32 ............................ TAGCTTGTTTTATTTTATGTTGTTGGCGGTGG 17518 28 100.0 32 ............................ TAATAAAGAAAACTGTTTAGTGCTTGATTTTG 17578 28 100.0 32 ............................ TGAAATGATGATTTCAGTTTGCTTAACCGGTC 17638 28 100.0 32 ............................ AACAACACATCATTGCCCACGATTCTGACCCG 17698 28 100.0 32 ............................ AAAGCAGATGAACGAAAAATTCGTTTTATCTG 17758 28 100.0 32 ............................ TTAAAAAGTGTGTCAGATAACTTAGGCGTTAT 17818 28 100.0 32 ............................ CGCAATATTTAATAGCTAAATGTTCACAAATT 17878 28 100.0 32 ............................ ATTCTTTGTTCTATGCTCATTGTAAATTACAT 17938 28 100.0 32 ............................ ATATCAACCCAAATACAATGCTAGTTACAATA 17998 28 100.0 32 ............................ AAGCGAGCACACTGAATCATTGCTTTGTGTCG 18058 28 100.0 32 ............................ GGCGGAAAATCATGGGTAGCGTATCAGGACAA 18118 28 100.0 32 ............................ TTCCATGCGCTTTATATAGAGTTTAATGGACT 18178 28 100.0 32 ............................ ACAATATTTAATAGGTAAATGTTCACAAATTA 18238 28 100.0 32 ............................ ACAGCAAAAGTACAAAAAATGAGCAAATTCGA 18298 28 100.0 32 ............................ TTCTTGAATTTTTATAGCGCATGACATTATTT 18358 28 100.0 32 ............................ TTTGCGTAAATATGAAAAAGTTGGTGATTTAT 18418 28 100.0 32 ............................ TCTGAGCTGTTGCAAATTATAGAATTATATGA 18478 28 100.0 32 ............................ AACAAAACTATGTGCCATTGGTTGTTGCGTTG 18538 28 100.0 32 ............................ ATTGGAAGTAACTTTAAATTTAATGGCTTACG 18598 28 100.0 33 ............................ CAAAAATATCTTGCATTAATTTAATTTCTGTAT 18659 28 100.0 32 ............................ TGAAACAAGTTCTCCTAAACCAACAAAACTAT 18719 28 100.0 32 ............................ TTGAGCTTGTGTAGTTTTGTCATCGTGGTTGA 18779 28 100.0 32 ............................ TGAAATGGTAAATGGAATTGCGATAATACTTC 18839 28 100.0 32 ............................ TTCTGAATTCTGTATACATAAATTATGTCAAT 18899 28 100.0 32 ............................ ACTGAAACCATCACAATTTGATATTTGGGCAT 18959 28 100.0 32 ............................ TAACTATCTCAAAAACAGCATATTTTGAGTTA 19019 28 100.0 32 ............................ TCATTGTATCCTTATTGTGGGTATAGGTCAAT 19079 28 100.0 32 ............................ TTTGCCGAGGTGCTTTTTCTTTTTCAGTTTCC 19139 28 100.0 32 ............................ TGTTCCCTTGCAAATTTTATGCCTGCTTTTGT 19199 28 100.0 32 ............................ ATATACCCCGCCGGAAATCACAATAGAAGACC 19259 28 100.0 32 ............................ TCTTTGATGTCTTGATGGAGCTGTTGATACTG 19319 28 100.0 32 ............................ TTAATCTGCCGGACAGAGATATTGTGGACGTG 19379 28 100.0 32 ............................ AACGACGGTAAAAATGACGGTATAGAATAAAC 19439 28 100.0 32 ............................ TCGGTCCAGCAATCGCCGAAAAAAACACATTG 19499 28 100.0 32 ............................ AAATACGCCGATTAAATTAATCATGGTCAGTC 19559 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 66 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTTTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGAATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTAGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGCGCGGAATCAAACGACTTTGTGCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAAAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //