Array 1 33203-36633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALCR010000009.1 Paludisphaera sp. JC665 9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 33203 32 100.0 34 ................................ ATCACCCACGAGTACTTCGTCGACGAGATCGAGA 33269 32 100.0 33 ................................ TGCAACCGGGGTTCGAGCTGCGAGAGGCGGCGG 33334 32 100.0 34 ................................ CTCCGGGGGACGGGGAGGCGAGGGATGAAGTTCA 33400 32 100.0 32 ................................ TTTGCACAGATCGAGTATGGGGTGGGGCTCAA 33464 32 100.0 35 ................................ GTGAAGAGGAGTGCTAGGGCGCAGCGAGCCTTCAC 33531 32 100.0 33 ................................ TCACGCAGCTCCTTGGCCGTGATGTGGCCGACG 33596 32 100.0 35 ................................ CAGGCTCCTGAGTTGTAGAACCGCTTGGAATCTTG 33663 32 100.0 35 ................................ CTCGAAGGTCGCTGCGAGCACACCCGCAAGGCGTA 33730 32 100.0 35 ................................ TTACGTACGCCAACCCTGCCTTTCATCACGTCTCG 33797 32 100.0 36 ................................ AAACTGACCGAGGCCAAGGCCCTGGGCGTCCCCCAG 33865 32 100.0 35 ................................ TCGCCGTGCGAGTGGCGAAGCCTGGACGGCCTGGT 33932 32 100.0 36 ................................ CCAGCCAAATCCAAGGTCGTCTCAGCCTCCCAGCGG 34000 32 100.0 34 ................................ GCTGACGGCACGTCCTTTAGGATCGCCAGTGCTG 34066 32 100.0 34 ................................ ACCATGCGGAGGTCGATCGCCCGAATCCGCTTCA 34132 32 100.0 33 ................................ TTAGTACGGGTGTCCTAAAGCATGGCGAGTTGA 34197 32 100.0 33 ................................ CTCGACAACTGAGACAGATCCGACTCCGCCGAC 34262 32 100.0 33 ................................ GTCTGATGCCCTATATGCCACCCCCGGCACAAT 34327 32 100.0 33 ................................ CTCGCCACCGGCCGCACCGGGAGCACGCTGACC 34392 32 100.0 35 ................................ ATGGCTTCGCAAAGCGCGAAGTAATAGCCCTCCAT 34459 32 100.0 35 ................................ GCGATGTCCCCAAGGGCTTCGTCGCCGATGGAGCC 34526 32 100.0 36 ................................ CAGTGAGCATGCTGTGTGATGTCAGACGGTCAGAGC 34594 32 100.0 33 ................................ TCATGCACGCGGACAACCTGAAGCTCATGCCGA 34659 32 100.0 36 ................................ CTCAAGCAGTCCTTGATTGTGCCGGCGGCGGCCCTG 34727 32 100.0 35 ................................ GAGATGGTACAACAAACACTCCCTGGAGGCGAAGC 34794 32 100.0 36 ................................ CACCGGGCTTACACCGGCGATGGCTACGTTCACGAC 34862 32 100.0 35 ................................ TACGGCCGAGCGGCGAGCGTCACTGAATGGCTGCT 34929 32 100.0 33 ................................ CATCGGAGGCAGTCTCACGCTGGCCCCGGGGAC 34994 32 100.0 34 ................................ CTATGGTGGATATGGTGCATGGCATGGAAAACGA 35060 32 100.0 34 ................................ CTTGGTCAACCCGTTGAGCCACAGCCAGAGTCGA 35126 32 100.0 35 ................................ CGTGGATTCCGAAGGCGTCTGCCCCGTGGCGATTC 35193 32 100.0 35 ................................ GTTTGGTTTCCTCGCCAACGGGCCGCTCCCACATG 35260 32 100.0 35 ................................ GTGTTGTCCGAGCCGTTGACGGCCCCGCTGGTGGA 35327 32 100.0 33 ................................ TCACGTCTGGGGCCAGTCGTCCATGACAACCGC 35392 32 100.0 36 ................................ ACGAACGTCGCGGCCGACTGTCGCAAATACGCCGAG 35460 32 100.0 34 ................................ GACTCGTTCGACGGACTTGATGGGGTTTGTGACT 35526 32 100.0 35 ................................ CGCAATGGCTTTCGCGATCTTCCTGGCGTCGGCTT 35593 32 100.0 35 ................................ GGCTTCCCCACGGTGGCCGTCGACACCCACGCCGG 35660 32 100.0 37 ................................ CCAACGGTCGACTTCTCAAGCGACACCCCCCTTCGTC 35729 32 100.0 35 ................................ GCTCTGGGCTCGCGGGCGAGGCGGAGCCCCTCCGC 35796 32 100.0 35 ................................ CGTATCCCGGTTCACCGAGGACGCGAGGGTAACAA 35863 32 100.0 36 ................................ GTCTCGGCCTCGATCGACTCGACCGGCGCGACGGGC 35931 32 100.0 34 ................................ CGCTCCACCCTGGCGACTCACCGGACCTTATCTG 35997 32 100.0 35 ................................ CATCCAGTACCAGCCTGGTTCAGTCGGAAGCCCTT 36064 32 100.0 35 ................................ CAGTATGGACCCAACCCCGACTCCAACAACGGCCA 36131 32 100.0 34 ................................ TCGCTGCGTGGCGGGGAGACAACGCGGATGACGG 36197 32 100.0 35 ................................ TTTGACGAGGGGCGGGACTACGTAGAAATGCCCTT 36264 32 100.0 36 ................................ GCAGTTGGTGCAGTTGATCCCATCGGGCCAACTGAC 36332 32 100.0 36 ................................ TGCCTCCCGAACGTCAGCGTCAGTCCGGCTACCTAT 36400 32 100.0 34 ................................ GAGCCGCCGACCTGCTGCCGGTTCAACTCGCGGA 36466 32 100.0 35 ................................ GCTCGGAGCCGATGAACACGGCCTGGCCATAAGGG 36533 32 100.0 37 ................................ GGCGAACGATTCCGCTCCCCATTCGGCGGGAGATGTC 36602 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 52 32 100.0 35 GTCGCCCCCCATGCGGGGGCGTGGATTGAAAC # Left flank : CGGGACGGCCTTGCCTCAAGTCGGAGCCCTTCATGTACGTCCTCGTGACTTACGACGTTCAGACGACCTCGCCCGACGGCAAGCGACGACTGCGACGCCTGGCCCGAGCCTGCCTCGACTACGGCCAACGCGTACAGCTCTCCGTGTTCGAGCTCAAGCTCGACCCCGCCCTTTGGGCCAGTTGCCGCGAACGCCTCCTCTCCATCATCGACCCCGAGCATGACAGTCTTCGGGTCTATCATCTGGGCTCCCGCTGGGAAGGCCTGGTCGAGCACCACGGAGCCAAGCCCGGCTTCGATCTCGAAGGGCCCCTGATTCTCTGACGCGGACGCCAAGCGCGCACCAAATCCCGGGACGGTTCGCGGCCCTCGTAAACCTCTTTGGCAATACGGCTTGCAGAGTTTGCATGACCCTTTCGTAAGGCTTGAGAGTCGCCTTAGGTGCTGGTTCGCGAAATCCAGCACTTAAGGAGCAAGCTCAAGAGCACTTAGAATAGCGGA # Right flank : CCGCTCGTGGGGGCGATCGCGTCGAAGCGGCCGGAGTGTCGCCCCCATCGAGTGGCGGGAGCAATCGGCGGGTCGCCGATCCGCCTGGTTCCTCCTCACGCGACACGTCGGAGTAGGACCGCAGCTTCGGAAGTCGAACTCGGCCCGGACCTCGCAGGGCGGCCGCAAGATCCGCGCGGGGGCCAACGGGCCGATTCGTGGGAGAGCCTGACGCTCCGCTCACACCGCCCCAGCCCGAACCGAGGAAGGCCTTCTGACAGCCAGACGAAGGCGATCGGAGAATCGAACGCCGTGATCCATCAGGCGACGCGGAACCGCGGCCCTCCTCTGGGGCCGGCCCACGGCTAAAGAGAAGTGCAGTCGCCCCCGCCGCGACCAGAAGTCGCGGCGGGGGCGGTCTTGGAGATCAGCGTCTGCTGGGTCTCGGACGGATGTTGCCGGCGACGACGCTGCAGGCAACGAAGCCCGCCATCGCCAGGATGAAAACGAGCCAGCTGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCATGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //