Array 1 566126-565256 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHCZ01000008.1 Providencia rettgeri strain GPAT395_S2 12_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 566125 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 566065 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 566005 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 565945 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 565885 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 565825 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 565765 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 565705 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 565645 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 565585 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 565525 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 565464 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 565404 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 565344 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 565284 28 89.3 0 ...T......A.........T....... | G [565258] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCGACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGAATAACCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACTCCTAGCATACTGATACCTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 576352-574763 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHCZ01000008.1 Providencia rettgeri strain GPAT395_S2 12_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 576351 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 576291 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 576231 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 576171 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 576110 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 576050 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 575990 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 575930 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 575870 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 575810 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 575750 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 575690 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 575630 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 575570 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 575510 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 575450 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 575390 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 575330 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 575270 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 575210 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 575150 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 575090 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 575030 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 574970 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 574910 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 574850 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 574790 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //