Array 1 377-1798 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZL01000113.1 Neisseria meningitidis strain MRSN431130 MRSN431130_contig00113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 377 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 443 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 509 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 575 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 641 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 707 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 773 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 839 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 905 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 971 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 1037 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 1103 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 1169 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 1235 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 1301 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 1367 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 1433 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 1499 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 1565 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 1631 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 1697 36 100.0 30 .................................... ACACGGGAGGAATACCTGCCAACAAGAGTG 1763 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //