Array 1 1068146-1069211 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGDQ01000001.1 Escherichia coli strain NCTC9043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1068146 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 1068207 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 1068268 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 1068329 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1068390 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1068451 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 1068512 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1068573 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1068634 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1068695 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1068756 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1068817 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 1068878 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 1068939 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 1069000 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 1069061 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 1069122 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1069183 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1094911-1096464 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGDQ01000001.1 Escherichia coli strain NCTC9043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1094911 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 1094972 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 1095033 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 1095094 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 1095155 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 1095216 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 1095277 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 1095338 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 1095399 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 1095460 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 1095521 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 1095582 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 1095643 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1095704 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1095765 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1095826 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1095887 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 1095948 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1096009 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1096070 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1096131 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1096192 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1096253 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1096314 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1096375 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1096436 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //