Array 1 6228-5400 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYC01000006.1 Listeria seeligeri strain Ls13-003 Listeria_seeligeri_Ls13_003_Contig06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6227 36 100.0 30 .................................... CCGAACGACCAAACATTTACATTCCCTTTT 6161 36 100.0 30 .................................... TACTAGTGCATTATTGCTACTGATTCTGCT 6095 36 100.0 30 .................................... CTTATGACACAGAAAAAATAGCGAGAGAAG 6029 36 100.0 30 .................................... AAGCGGCGAACGATAAAGCTAAAAAAGATT 5963 36 100.0 30 .................................... TTCCTGTAAAAAATAATCACCTGCAATCAA 5897 36 100.0 30 .................................... CTGCTTGTACCAATCTCTCTCTGAAGCGTG 5831 36 100.0 30 .................................... CGTTTCCGGTGAATTCATTGACTCAATTCA 5765 36 100.0 30 .................................... TTACATCTACTGGCGGGATGTTGTGGGTCA 5699 36 100.0 30 .................................... CGAGGTTGCTACTATATCGTTATTTGCACA 5633 36 100.0 30 .................................... TACGTTCTTTTTTCGGTAAAAAGAAAAGCC 5567 36 100.0 30 .................................... CGTGTGCTTGCAACAAAATTACAATATATT 5501 36 97.2 30 ......T............................. TTTCCAATGTGGTACTAACCAGGAACGAAA 5435 36 97.2 0 ......T............................. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 613143-603415 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYC01000001.1 Listeria seeligeri strain Ls13-003 Listeria_seeligeri_Ls13_003_Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 613142 36 100.0 30 .................................... TCATGAGACTTTTTAACATTTCTGCGGAGA 613076 36 100.0 30 .................................... TTACTGTTTGTAATATCTCTTAGCTTCATT 613010 36 100.0 30 .................................... TATCTGCATCTATAAATGGGCGGTTATAAT 612944 36 100.0 30 .................................... ATGGTATTGGTTTATATGCTTACTCTACAT 612878 36 100.0 30 .................................... ATGTATTATAGCATGCTTGCTCTGTAAAGT 612812 36 100.0 30 .................................... TGAAGGGCGCGAAAAACCCTCCAATCAGTT 612746 36 100.0 29 .................................... AATACAGAAAAGGCATACCAAGTAGAAGT 612681 36 100.0 30 .................................... AAGAGTTATAATTTAGAGAGAACCAAGAGT 612615 36 100.0 29 .................................... CTTACATCAGCTTGCAACGTTTTCGGGGG 612550 36 100.0 30 .................................... AGGTTATATTTACCAAGCTACGAACTGGAT 612484 36 100.0 30 .................................... GTTAGTTTTAGATTACTACACAAAAGGTTA 612418 36 100.0 30 .................................... AATATACCGAACGCATACGATACGCTAGGC 612352 36 100.0 30 .................................... TGTTGGGAAGCTAGAAATAGATGGGTGGTG 612286 36 100.0 30 .................................... TGTTGGGAAGCTAGAAATAGATGGGTGGTG 612220 36 100.0 30 .................................... TGTTGGGAAGCTAGAAATAGATGGGTGGTG 612154 36 100.0 30 .................................... TGTTGGGAAGCTAGAAATAGATGGGTGGTC 612088 36 100.0 30 .................................... TGTTGGGAAGCTAGAAATAGATGGGTGGTG 612022 36 100.0 30 .................................... TGTTGGGAAGCTAGAAATAGATGGGTGGTG 611956 36 100.0 30 .................................... TTGGAGAAGACAAAACATTAACTGTTATCT 611890 36 100.0 30 .................................... TACACAATTCATAATGAGTGAATAGAGCTT 611824 36 100.0 30 .................................... TTGGAGCATAGGGACTATGCTAACGGAGTA 611758 36 100.0 30 .................................... AAACCAAGCTCGGTACCATTCTGGTAGATG 611692 36 100.0 30 .................................... CTGTACCTGTATCTTGTACAAGGACGTGGT 611626 36 100.0 30 .................................... CAGCTTATGCAAAGGTGTATGTGGAGAAGA 611560 36 100.0 30 .................................... CTAATTTTTTAGCCTCACTTTCAATAAGTT 611494 36 100.0 30 .................................... TTTTAAGGAAGGTAAGGGATTCGAACCCTT 611428 36 100.0 30 .................................... ATTAAAGGCAACCGCTATACTATCAGATTC 611362 36 100.0 30 .................................... TCCAAAGCCGCAAAGGTGTAAATAAACCTA 611296 36 100.0 30 .................................... CCAATTTTTTTGTTGTATTGTACCGTTGAT 611230 36 100.0 30 .................................... CACACAAGCAGTTATCGTTCATCATATTAT 611164 36 100.0 30 .................................... AGATTTTCCGTTTTTCCTAGCCATCATCAC 611098 36 100.0 29 .................................... GGATACTCTGTAGCATCCCCGCCACCAGC 611033 36 100.0 30 .................................... GCAGCTAGCTTGTTCGTTTGTTGAGCAATA 610967 36 100.0 30 .................................... TTCGGATGGAAGACGCAATGTCCACGATGT 610901 36 100.0 29 .................................... TATGGGTGCATTGTGAAAGCGCGTCGAGT 610836 36 100.0 30 .................................... TAGGAAGCGAAATACAGCAACGTGCTCTAG 610770 36 100.0 30 .................................... TGATAACAGAGGCTTCTCGTGGGAGATACT 610704 36 100.0 30 .................................... TCGTGTGAATAGATACGCCTTCCGCAAGCA 610638 36 100.0 31 .................................... TGTGGGACTATCGACAATCATCTACGAGATT 610571 36 100.0 30 .................................... CTAACATGGTGTGCCTACGTAAAGTAGCTA 610505 36 100.0 30 .................................... TTAATACTTGCTACTACTTCTTTATCCTTG 610439 36 100.0 30 .................................... GTATTTTGCGCTGGTGTAATATCCTTGCGT 610373 36 100.0 30 .................................... CTACCTTTGTTACTTGTATCGCCACTGCTA 610307 36 100.0 29 .................................... ATTAATGAGAATTGTTGTAGATATAATGA 610242 36 100.0 30 .................................... CCAAAGCGGGTACTCTAACCAAACTGAGCT 610176 36 100.0 30 .................................... TTCGGGTGGCTGGGTTGACAGTAACACGTT 610110 36 100.0 30 .................................... TGTCGTCTTCTATACTAATGTAGTCCACCA 610044 36 100.0 30 .................................... TTTTGCAAGAGATAGATTTGCTTCTAATGT 609978 36 100.0 30 .................................... CACGGTGATGCCCTTCCAATGCGCTCGGTT 609912 36 100.0 30 .................................... TGTTATTTTGTCTACACTACTCGGCACAGT 609846 36 100.0 30 .................................... CGTGATTATGTAACCTATGCGCACTTTGGT 609780 36 100.0 30 .................................... CGGTTGTGAGATTGACTGCTTATCCCCTTC 609714 36 100.0 30 .................................... TTCATCACGTTTCATGCTAGCACGATTTTG 609648 36 100.0 30 .................................... TCTTACATCAGCTTGCAACGTTTTCGGAGG 609582 36 100.0 30 .................................... AGATAGTCGCCCTCATCAAACAGCAACAAT 609516 36 100.0 30 .................................... TTGTCTGCCATTCGTATTGTTTGATGCGGA 609450 36 100.0 29 .................................... ATTTAAATTGTATGGGAGCGCAGTCACAT 609385 36 100.0 30 .................................... AGTACATTATCTAATTATTTTATAAGCCCG 609319 36 100.0 30 .................................... AAGAACAGAGTGAAATTTTGACTGTCAACT 609253 36 100.0 30 .................................... TGATTCGATTATATCCTTCCATCATCAATC 609187 36 100.0 30 .................................... CGGCATCGGGATTGGTATCATGTGTGGCGA 609121 36 100.0 30 .................................... AGCTAGCAAGTTACGTGAGTTCATCCCCGG 609055 36 100.0 30 .................................... TGGGGAGGTTTTAAAAAAATGTCAACTCGG 608989 36 100.0 30 .................................... TACCAGTTAGTAATGATGACTCTGACCCTA 608923 36 100.0 30 .................................... TGATGGGTATATTTGTACCAAAGTTCTTGT 608857 36 100.0 30 .................................... TATGAATATACGTATGTACCAAACAATGAC 608791 36 100.0 30 .................................... AATCCGCTTACTAAACCGTTTTTAATTAGT 608725 36 100.0 30 .................................... CGTTGTTCGACGCTACAGAACGATAATATG 608659 36 100.0 30 .................................... TAACATAGCCATCACAATATGATTCTAGCC 608593 36 97.2 30 ....................A............... TCTCGTCCATATTCAACTTACTGGCAATCC 608527 36 100.0 30 .................................... TAGGTTGTGCAAGTTTCCACTCCGGTTCTG 608461 36 100.0 30 .................................... GCATTTCGTCGTTCTCGTCGCTTATATTCT 608395 36 100.0 30 .................................... ATTTGGACGAGAAAACTTGCCGCAATTAGT 608329 36 100.0 30 .................................... AGTAAATAAAAAAGGAGTCGCTAAACATGA 608263 36 100.0 30 .................................... GAGTATTGATGATTATACCTTGACATTCAA 608197 36 100.0 30 .................................... ATTTACCGTTGAAGACAAAGGTTTATTCAT 608131 36 100.0 30 .................................... AATGGCTGTTTTAACGAAACTTGAAGGCAC 608065 36 100.0 30 .................................... TCGCAAATATCAATGGGATATCAAAACAGT 607999 36 100.0 30 .................................... AATCGCGGGATTATCTGATAGTGATAGATA 607933 36 100.0 30 .................................... ACATTTTTCTTGGCTGTAAATCCGAGCGCT 607867 36 100.0 30 .................................... ATTTACCTTTGTGCCGAACACCTAGAATTC 607801 36 100.0 30 .................................... TTTTTTTCTTGAGAATACTCAAATTCCCAC 607735 36 100.0 30 .................................... ATTGCATTTGTTGATAATTTGCCATGGAAG 607669 36 100.0 30 .................................... ATTTTTAAGTCCCTCCCGTTTCTTTACTAT 607603 36 100.0 30 .................................... CGAGGTCCAAACAACGAAAACCGCGATGGC 607537 36 100.0 30 .................................... AGATGAAAATACTAAAACAATCGTCGGGGT 607471 36 100.0 30 .................................... AGTTGTCATTAACAGCGGTGGCGGTGATGT 607405 36 100.0 31 .................................... TTTATGCTTGTCTGGGTCATGATAATCAGTA 607338 36 100.0 30 .................................... TTTCAGCTTGCATGAGACTGAAAAAGTTAG 607272 36 100.0 30 .................................... TCGGGGTATTTTTTTGAAATTAATTTATAA 607206 36 100.0 30 .................................... CAGGCATACGATATGCAGAAGCATTAGCAC 607140 36 100.0 30 .................................... TTTATGATGAGTCTGTCATTGACACATTAG 607074 36 100.0 30 .................................... TAAAACCTGATTGTGTAGTCTTACTCAGCG 607008 36 100.0 30 .................................... CGGAGTTCGGAAATACGATTTCGGAAGTGT 606942 36 100.0 29 .................................... ATTTTAAGAACTTAGTACGCAAACCAGTA 606877 36 100.0 30 .................................... CGCGACACTTGTATAAGGACGAATTCGAGT 606811 36 100.0 30 .................................... AAGCTCTTTCAGATATTCTTAGTGACCTGG 606745 36 100.0 30 .................................... CTCCGTCTGCAACCACATAGCGGACGTTAA 606679 36 100.0 30 .................................... TTTAGAGTTAAACACCTGCCATTCCACGTT 606613 36 100.0 30 .................................... ACAATCGCCTGTTTCTAGATTTAGATTGAT 606547 36 100.0 30 .................................... AGAAGAACTGAAAACACAACCGAACGACGG 606481 36 100.0 30 .................................... TAATTAATGGCTTTGAAAAAACAGTATATT 606415 36 100.0 30 .................................... TGCAATTTTTGCTCCTTTTTCATCAACAAG 606349 36 100.0 30 .................................... CTTGTGATGCTTTCTAAAACTGTTGAGCCG 606283 36 100.0 30 .................................... GATATTTAGATTGTAAGGCAGCGCAGTTAC 606217 36 100.0 30 .................................... TTCGCAATTTGACACTGGTTATCTTACAGG 606151 36 100.0 30 .................................... TGGTATTTGTTTCATTCCGCCACCTCCAAC 606085 36 100.0 30 .................................... TTTATTCACTTTGCTTAAGTCATCTTCTGT 606019 36 100.0 29 .................................... AAACTCGGAATTACGAAGGGGACGACGGC 605954 36 100.0 30 .................................... AATCTACTGTTTTGTTATTATATTGCACTA 605888 36 100.0 30 .................................... TTATTTTATTGCAATATGTCAAAGAGTTCT 605822 36 100.0 30 .................................... TTTTAAAAATCTGTAGAACGTTGCCCTCTA 605756 36 100.0 30 .................................... CGCATTTTCTCGTAAAGAATCATCTAATTT 605690 36 100.0 29 .................................... TGTATTCTGATACATAGTTTTTAGCAACT 605625 36 100.0 30 .................................... AAGGGAATTGATTTTGGAGCACCGACAGGA 605559 36 100.0 30 .................................... TCTATATTCCAGGAACCTACGCAGAAGCAC 605493 36 100.0 30 .................................... TCTAACGGAGACACAATAAATCCACCAGCG 605427 36 100.0 30 .................................... TGGGGAGGTTGTAAAAAAATGTCAACTCGG 605361 36 100.0 30 .................................... TTGATTCTCCGTATTATTTTCGAGCCAACT 605295 36 100.0 30 .................................... GGATTTTGGCAAGAGGGCGATTTTAGTCGA 605229 36 100.0 30 .................................... AGAAGCCATCGCTGAATTGGAAGCCTATGA 605163 36 100.0 29 .................................... AATGAGAAACTTGAAAACTTTGATGACAC 605098 36 100.0 30 .................................... CTAAATCGACAATTTCCGGTCTCTCTCCGA 605032 36 100.0 30 .................................... TTACAAGCTGATGGACAGCTTGATGAACAT 604966 36 100.0 29 .................................... GTAAGCGTTTTGGGTGTTTTGTCGATAGT 604901 36 100.0 30 .................................... ATTTATGGCAGATGTAGTTTTACCAGAAGT 604835 36 100.0 30 .................................... TTTAGAAGTAAAAGACTTGGTTAGAGAGGG 604769 36 100.0 30 .................................... TCCGCTTACATTCGACTCGCTTTATAGAGT 604703 36 100.0 29 .................................... TTGAAGTAAGAAATAGTTTATACAATAAT 604638 36 100.0 30 .................................... TGTGACATTCAAACTTGTTGATGTTGCTAG 604572 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 604506 36 100.0 30 .................................... TTAAATCGACGTTGTTTTCTATAGCGTCCA 604440 36 100.0 30 .................................... CATTCATTCGCTCATCTTCAACGCTGTTAT 604374 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 604308 36 100.0 30 .................................... TTAAATCGACGTTGTTTTCTATAGCGTCCA 604242 36 100.0 30 .................................... CATTCATTCGCTCATCTTCAACGCTGTTAT 604176 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 604110 36 100.0 30 .................................... TTAAATCGACGTTGTTTTCTATAGCGTCCA 604044 36 100.0 30 .................................... CATTCATTCGCTCATCTTCAACGCTGCTAG 603978 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 603912 36 100.0 30 .................................... TTAAATCGACGTTGTTTTCTATAGCGTCCA 603846 36 100.0 30 .................................... CATTCATTCGCTCATCTTCAACGCTGTTAT 603780 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 603714 36 100.0 30 .................................... GACAGAAGACAGAGAGAAATGGACAGCGGA 603648 36 100.0 30 .................................... TGACTATGGAATTGATACACCCAGCATCGC 603582 36 100.0 30 .................................... TTAAAAGAAAAGCCAATTTGGAAAAGCTCT 603516 36 100.0 30 .................................... ATATATGTGCATCTGCAATTGGTATGGCCG 603450 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== =============================== ================== 148 36 100.0 30 ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Left flank : TAATCTGTATGCAAAAGAATTATTTAATAAGCAAGTTTTATTTTTTATAGAAATGCCAGAAAAAACTATAATTTCAGAAGTGGGAATAAAGAAATTTCAATTACATGTTGAAAAAATGTTAACAAGAGGAATCAATGTATTTATCATTTCTGAGCATATTTGGATGGATGGTGCAATTAACCATTTTTATTTTAGTGATATTGTTAATGAATTACAAATTATGGTTAAAAAAGAACAAATTATTGCAAAGATACCTTTAATCGTAGAAGAATCGGATTGGATAAAAGCAATAAATTGGTCTATGTTAGCTGTGGATAACTATGGTGGAAAAACGGTCGAATTAAAGTTAGAAGCTGTGGATAACTTAGTTGTATTTGTATTAGTTTATTTTATTTTCATTTATAATGGATGGCGAATTATCGTTGACTACAAAGGAATTCCTGCAAATATTATTGTTTACCTTGATAGGTTGATTTAGGTTGAGGTATAATGGAAAAGAC # Right flank : TTCAACACTTAACAAAAATGATGTTAGGTGACTGATGAAAATATGTAAATGTATTTTTATTTCGATGACGAGTTGAAACCATTACCGGGTCTCTATTTGAAAAAGTTGGTGGCACGTGAACAAGTCGAAACGGAAGCTGCGTTAGGACCAGTTCAAGCACTAGAAAAGTTGGTGAAAATGGTCGGGAAAGTGGACCCAGAAGACTTAGCAATTGGGATTGGGATTGGCGCTCCTGGACCGCTTGATGTGACGAAAGGTATTTTTTTAGATGCTCCAAATTTACCTGGGTGGTACGGTTTTTCGATTCGAGATGAACTTGCGAGTCGTGTAGGTATGCCTGTTTCTTTGATAAATGATGCCAAAGCTGCCTCACTTGCTGAAGCGAGAATTGGCGCGGGACAAGGCTATGACAGTGTACAATATATTACCGTAAGTACAGGTATTGGCGGTGGATTCATTTGCGGTGGTGAACTGTTTTCTGGCAATCACGGGCATGCCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 637593-636911 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYC01000001.1 Listeria seeligeri strain Ls13-003 Listeria_seeligeri_Ls13_003_Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 637592 29 100.0 37 ............................. TCACAAACCACAATCCGCCGACTTCCATCACAGTGTA 637526 29 100.0 36 ............................. ACGTTAGTGCTATATGATGAGGAGGATATCGAAATC 637461 29 100.0 35 ............................. CAATTTCCAAATCAGTTAGTTTTTTGCTTAATTCT 637397 29 100.0 35 ............................. TTTTACCTACGTAACTTTCTGTTTGTAATCCCATC 637333 29 100.0 34 ............................. TTCAATTAAAACTGGTATAAACTCTTTGATTTTT 637270 29 100.0 36 ............................. CTATCCCGGGAATTCTGTATAGATCTGGATAAATAA 637205 29 100.0 40 ............................. CATCTTATGTTACGATTCAAGTGTTTTTATGTTACAGTTG 637136 29 100.0 40 ............................. CAAAACGATAAAGCTTTTGGTTTCCAAGTGCATCAGAATA 637067 29 100.0 36 ............................. CGGATAAAGTGTTGGTATGATTAGCCTCACACGCCC 637002 29 100.0 34 ............................. TTTTTTTCAGATATATGCAACAAATGAATTTCTC 636939 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTAAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //