Array 1 255707-256758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXB010000001.1 Listeria marthii strain FSL L7-0373 NODE_1_length_922176_cov_56.138669, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 255707 29 100.0 35 ............................. TTTTTCTGTTGATTTCCATTTTCGTATCTGATTAG 255771 29 100.0 35 ............................. GAAACTTACGACGTCGTTAACAGTTATGGACAAAC 255835 29 100.0 34 ............................. CCCCCTGTATCTCCTGTAATCAACTCGTGTATAG 255898 29 100.0 34 ............................. TAGAAATAAAAAGTTGAACCCGTTTTTTTGTGGG 255961 29 100.0 35 ............................. AAATGACCCCCACTTGTGTTTTGAATTGAACTTTA 256025 29 100.0 37 ............................. TCGTCAAAAACAAAAAAAGGTTCAATTTTTCTATCTG 256091 29 100.0 34 ............................. TATGAATGGGTAAATGAATATGTAGATAGTAAAC 256154 29 100.0 35 ............................. CTAGAAATCACTTGCAGATTCCCAGTCAATTTTTT 256218 29 100.0 35 ............................. AACGTTAATGAAGACTGATATTGAAAAAGCAATGA 256282 29 100.0 34 ............................. GCTGGTAGAAGAATATTATTAATAGATGGCGAAG 256345 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 256408 29 100.0 36 ............................. ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 256473 29 96.6 34 ..A.......................... AAAAACATATTTAAATATCCCTACGCTTTTAAAC 256536 29 93.1 35 ...C..........A.............. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCAT 256600 29 100.0 35 ............................. GAGGTTGGTTTTGATTGCTCGGGACTAGTTCAATG 256664 29 96.6 37 ..............A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 256730 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 98.6 35 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAATCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGTGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGCTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTCCAAATTTTCCATTCCCTACACAAAAAATCCAACCAACATGATTTAGGCTTATTTTTTATCCTCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCTAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 271702-275237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXB010000001.1 Listeria marthii strain FSL L7-0373 NODE_1_length_922176_cov_56.138669, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 271702 29 100.0 36 ............................. TTATGATTAATTCATCGGATTGGCAAGTGTGAACGA 271767 29 100.0 36 ............................. GTAGAATGTGCCATTAGCATTACTATCCGTTTTAAG 271832 29 100.0 37 ............................. TATTGAGTTTTACTAAAACTATGGTGAACTTGGGTGT 271898 29 100.0 35 ............................. TAAAAAGGAACAACAAGATAACCAGTTTTTTCAAC 271962 29 100.0 37 ............................. AAAAACATTCGTTTCTTAAAAATGTATCTGGATGTTT 272028 29 100.0 38 ............................. TTATACTTCGATATATAAAAGGTCAAGTAATACCGCCG 272095 29 100.0 36 ............................. GAAAAATTGGAATACTTAAGGAATCGCAAGGGTTGG 272160 29 100.0 35 ............................. TCTTTAGTACTGCGATATTTAACGCGTTGCTTACG 272224 29 100.0 38 ............................. CTATACTATATGTAGGTGTATATAGTAGTGGTTCCCGG 272291 29 100.0 37 ............................. AAATAACTCGGTTGCTTTGTTCCATGACATTCCTGCG 272357 29 100.0 35 ............................. TTCGGTTTTGAAGTTCGTAATCTTTTGGGTACATA 272421 29 100.0 36 ............................. AATGGCATCGGCAACTTCACATAATAAAGCGGCTCT 272486 29 100.0 35 ............................. CTCCTTTGGCTCGACACTTCAATGCCATATTCGCG 272550 29 100.0 38 ............................. TCGGCACTTCGTTTACAGCCTTCTGGATTGTTTGAAAC 272617 29 100.0 34 ............................. CTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTT 272680 29 100.0 35 ............................. ACGGCACTAATGCTCTTACCAGTATTTTGCATTTT 272744 29 100.0 34 ............................. TTTAGAAAAGCCACGTATTCCGCAATTTCTTTAT 272807 29 100.0 35 ............................. TTTGTAATGCTACTACCAATAGCTGGAAGTCTAAG 272871 29 100.0 36 ............................. ATTGCTAGAGTCAAAAGTAGAAAAATATTTAAGAGA 272936 29 100.0 38 ............................. AATGCTTTTGTGGATAATAAACGAATTGATAACGCTCT 273003 29 100.0 35 ............................. GTACCAGTTCGAAGTACGGGTTACGCAGAAATGAC 273067 29 100.0 35 ............................. TCTTCTGTTCGACTTCTGCTACATACAGCATTAAG 273131 29 100.0 38 ............................. GCTGAATAAGAACTACCTTTTCCGCTCGAAATCCCTCC 273198 29 100.0 35 ............................. TTTATATATACCGAACCAGACAGATATACACCAGC 273262 29 100.0 35 ............................. AGCTTATTACGGCATCCTTAGAGGCGTTGAATATG 273326 29 100.0 36 ............................. CTTAATTTTACCTGAATTTAGTCGCGTGTTATCCCA 273391 29 100.0 36 ............................. AAAAGAGAAGAGCGAAAGGATGTGAGAGTCGATGGC 273456 29 100.0 37 ............................. TTAGCAACAACTTTCAACCAACTGCAAGGTTCCGTTG 273522 29 100.0 35 ............................. CCTAAATAACTTATTTTCGTTCGCGCTCCAACTGG 273586 29 100.0 34 ............................. AAGGCAGAGAACTTCGTTGGACTTCGTATAACTA 273649 29 100.0 37 ............................. ACAGTTCTGTTTTGTCCGCTTTCTGTAAAATAAAACG 273715 29 100.0 36 ............................. GTGATTAAATCGGTGGCTTTGTCAATTGCAAGCTGT 273780 29 100.0 37 ............................. ACGAGTGCGTCAAACACTGCGGTCACAATCTGAACAA 273846 29 100.0 35 ............................. GGCTTAAAGTCATTTTCAACTGTAGGTCCAAATAA 273910 29 100.0 34 ............................. TCATGACCAGCGCAGTTTTAAAGCGTCGCACATT 273973 29 100.0 36 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGT 274038 29 100.0 36 ............................. AGTCCAAAGACAACGAATATCACGCCGAACAATATC 274103 29 100.0 37 ............................. ATGTTTGCAAAAGCAATTTTGTCCATTCGAAATTCTT 274169 29 100.0 36 ............................. ATCTCTACGCTGGAAACCGAGAAAAGAGCAAGCATA 274234 29 100.0 36 ............................. CATACTAAGTTGTGGAGGGACAGCGAATTATGAGAG 274299 29 100.0 37 ............................. TCGCTTGAAAATAAATTGGATATTGATAAGTATATAA 274365 29 100.0 35 ............................. TTTTGATTTTAAATGTGAAATTGATACATTGGAGG 274429 29 100.0 36 ............................. GCGGCCAAAAACGCGGGCAAGGGTGTAGCCAATAGC 274494 29 100.0 37 ............................. ACAATTATGCCAATTACAGGTAGCATTGCTGTAACTA 274560 29 100.0 35 ............................. TTGCGTGCTTCTGTGGAAAATCTTACACTAGAAAA 274624 29 100.0 35 ............................. TGTTTACGCTGAATAAGAAAAGTAGATTCACCAAT 274688 29 100.0 37 ............................. TATATACTCTTCTACGTTCAGTATTCTTTGTACTCAC 274754 29 100.0 34 ............................. TCCGATGAAGAGGTTTCGACTTCCACGGAAAATT 274817 29 100.0 37 ............................. AGCGCCCGCACTGGGTCTTCTTTCGCTTTATCAAACC 274883 29 100.0 35 ............................. AAAAAAGAGTACCTGGGAAGCGGCAACTTCACAAA 274947 29 100.0 36 ............................. AAGGTCACAGCTAAGTATATGTCTAAGCTTCTTTTT 275012 29 100.0 38 ............................. TGTACAGAATCAATTAGGTTAGATACAAATTGTGTACG 275079 29 100.0 35 ............................. CAGCCAGAAAAAGAGCCAGTGAAAGAAGAGCCACA 275143 29 100.0 36 ............................. TTTGTCCAAGCTAAAAAGAATAAACCAGTTAAGCGC 275208 29 86.2 0 ...............C......CA....C | C [275230] ========== ====== ====== ====== ============================= ====================================== ================== 55 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTCAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGAGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAAGCGCCGGCAACCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //