Array 1 81422-77161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHCR010000001.1 Streptococcus suis strain 2018WUSS101 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 81421 36 100.0 30 .................................... TACTAGACAAGTTGCATGATGAGAAGCTAC 81355 36 100.0 30 .................................... CGGGTTAGTTGCCTATTACTCCTATCTTTT 81289 36 100.0 30 .................................... TCAGCCCTCTTAATAGCCTGGTGGCTGTCC 81223 36 100.0 30 .................................... GTTCTTCCTCGGTTTCAAAAGCTGAGTGAG 81157 36 100.0 30 .................................... TGAAAGCAACAATACTATTTATTTACAGTA 81091 36 100.0 30 .................................... TGCAAAGGAAGGAAGAAGAGTTAAGGAAAC 81025 36 100.0 30 .................................... ACCCTAGCGACAAGAAAGAGCGGATAGTGG 80959 36 100.0 30 .................................... AGGTTCGGGTGCTTGGTCTGGCGGTCTTGC 80893 36 100.0 30 .................................... CCAACGTCTGTCATAATTCCTTGGATACCA 80827 36 100.0 30 .................................... TTTGGTCTTGAGAGACTTATATACTTTTTC 80761 36 100.0 30 .................................... TACTGCTGGATAGTTCGGAACGGCTTGGGC 80695 36 100.0 30 .................................... AAAGAATGCTGAAAAACTAGCTAAACATTT 80629 36 100.0 30 .................................... TAAGTATATACGTGTTAAGAGTAACGGTTT 80563 36 100.0 30 .................................... AATTTATTTTCTTATTGTATACGGCATCTA 80497 36 100.0 30 .................................... TCCAAGCCGTACACGTTTCAACAACCCAGT 80431 36 100.0 30 .................................... TACTTTTGTTTCAATGTCACCATTTCCTGT 80365 36 100.0 30 .................................... GGTTGCCACTGGAAGTCAAGGCTGTGGATT 80299 36 100.0 30 .................................... AGATATTTCTGAAAAAATTAAACTAGAAAT 80233 36 100.0 30 .................................... TAATGTCGAGCGTGTCGCTGACATCATCAC 80167 36 100.0 30 .................................... AACTGGCAGTATCAGGTACAAAAAGTGGTA 80101 36 100.0 30 .................................... CTTGATTAACGAGCTGGTACATTGGGATAA 80035 36 100.0 30 .................................... TGCTGAAATAACAAGGTACTGATTTTCAAT 79969 36 100.0 30 .................................... AGCTTTCTAAATTCCTCCGAGTTGTGATAA 79903 36 100.0 30 .................................... GGTTAAAATTGTTGCTGAAATGAACGGAGT 79837 36 100.0 30 .................................... GTTAGGGCTAGCAGGTGGCACAGTTGGTTA 79771 36 100.0 31 .................................... TAGAGGCGGTCAATCCGTTTGCTGAATTGTT 79704 36 100.0 30 .................................... TTACTAGAATATCTTATCCCCGAATTGATA 79638 36 100.0 30 .................................... AGACGGGTTTTACTTCTTCTTCTTCCATTA 79572 36 100.0 30 .................................... ATTATCAGTTAAACAATGAAATTTGTTTTC 79506 36 100.0 30 .................................... GGTCGGTATTCTTCCTATTGGGTTGAACGC 79440 36 100.0 30 .................................... AATAGCTGAATGTATGACCGTTTTCTATGC 79374 36 100.0 30 .................................... AGGACTGTGGTCTGATGTTGCCAAATCAAT 79308 36 100.0 30 .................................... CTTTACAACACTTTAGAAGTTTATTGTCTA 79242 36 100.0 30 .................................... CTGGGAAACCACGGAAGCACCGTCACGGGC 79176 36 100.0 30 .................................... CACAAATCCGTGTGACTTTTAATTTTAGGA 79110 36 100.0 30 .................................... TCTATTTCTGAGAAAGGTAGGGTACTGGGA 79044 36 100.0 30 .................................... CACAAATCCGTGTGACTTTTAATTTTAGGA 78978 36 100.0 30 .................................... TGAATTTGTAAAAATAAATGATTGGATTGA 78912 36 100.0 30 .................................... AAATTTATCTGACGATAGTGAATGCGTCAT 78846 36 100.0 30 .................................... GTACTTTGAAGGTAAAAATTGGTATAAGGT 78780 36 100.0 30 .................................... GATTGATAACACGCTTCGGCTTGCGATTGT 78714 36 100.0 30 .................................... TGCAGTAAGTGCTGAAGCGATTGCCCGTCA 78648 36 100.0 30 .................................... TGGGGCATACTGTATCATTGAAAAAGTGGA 78582 36 100.0 30 .................................... CGTGCTAGAACTACCTTCTGTACCTGTACT 78516 36 100.0 30 .................................... GAATAGTCATGGCAGATAGCTTGTTTCAAA 78450 36 100.0 30 .................................... AGCATGGGAAGATGACATTACAGTCATTAA 78384 36 100.0 30 .................................... TATTCGCCCAGCTTGAGCGTGAGCAAATCA 78318 36 100.0 30 .................................... AAACAGATTAGTTGAATTAGACAAGGGTGT 78252 36 100.0 30 .................................... GCTCGATGATGGAACTTTAGTAGGCAGGTT 78186 36 100.0 30 .................................... TCATCTATAAGTGCCTTTCTTCGATATTTA 78120 36 100.0 30 .................................... AGGGCAAGGCTCATTAGAGTTCGGGAGTGA 78054 36 100.0 30 .................................... ATCATTATTTTCTAATAAATCAAAATCTAA 77988 36 100.0 30 .................................... ATTCTATCGCCGAGCGTGAACGTGTGATTG 77922 36 100.0 30 .................................... GAATAGCATGTACTCGACCTATTCAACTCC 77856 36 100.0 30 .................................... TCCAAAATACTGCGAAAACCAACAATATCT 77790 36 100.0 30 .................................... CAGACCTGGGAGCGATGAGTCGGTGTCTTA 77724 36 100.0 30 .................................... AGTCCACAGGTCTGTTTGATGTCAACGGCA 77658 36 100.0 30 .................................... TAGCCACAAACGGAAAGTTGCCTTGAGACT 77592 36 100.0 30 .................................... CTTTTGTTCTGTCAGTATTTGTCGTTTGTA 77526 36 100.0 30 .................................... CTTTGAGGGTCTCTGGGGTACATCAGCTGT 77460 36 100.0 30 .................................... ATTATATCTACTACATTAACCGCTCGTTTA 77394 36 100.0 30 .................................... AGCATTTTAAAGATACAGTCGTTCCGCAGA 77328 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 77262 36 97.2 30 .........................A.......... TTCTTAGTCTTAGATTCTTCGTCATCATAT 77196 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 65 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : GTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATATATAATCGTTTTATTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACTGACGGCATGATTGTTGGGCTGGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //