Array 1 36133-36680 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPP01000006.1 Listeria monocytogenes strain CFSAN049204 CFSAN049204_contig_0000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 36133 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 36199 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 36262 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 36326 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 36391 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 36455 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 36520 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 36586 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [36609] 36652 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 94.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAACAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAAAACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTGAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 51745-53199 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPP01000006.1 Listeria monocytogenes strain CFSAN049204 CFSAN049204_contig_0000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 51745 29 100.0 36 ............................. TTCATTACAATACGGATAATATTCATGTTCATATTG 51810 29 100.0 35 ............................. TCGCTTGTGTATAAACACAAGTCTACCGCAACACC 51874 29 100.0 34 ............................. TAACTTAAATAAGCATAAGGAAATGCCGCGCATG 51937 29 100.0 36 ............................. GTAGCTAGCCCTTGCGGTCCAGATGGCGCTTTGCCG 52002 29 100.0 36 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTATCC 52067 29 100.0 34 ............................. AGATAACGGGGAATTGGTACACGGATACTTTGTC 52130 29 100.0 35 ............................. CTATTTTTATACGTTTTAAAATGCCAGTTATCAGT 52194 29 100.0 35 ............................. TTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGG 52258 29 100.0 35 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTC 52322 29 100.0 37 ............................. CATGGGATAAAGAAATCATCATTGCTCCCCCACGCAT 52388 29 100.0 36 ............................. AAATAATATTCGAAGGCAACAAACTAAATCTTTTTA 52453 29 100.0 36 ............................. TCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCC 52518 29 100.0 35 ............................. CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC 52582 29 100.0 37 ............................. TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT 52648 29 100.0 36 ............................. TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA 52713 29 100.0 35 ............................. CCGGAAAATTGTGATTTAATGATTAGCAATCCACC 52777 29 100.0 37 ............................. AGAAGTGGAATACGTTGGAGTGGTTAAATATGACACG 52843 29 100.0 36 ............................. ATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTAT 52908 29 100.0 38 ............................. AGTCCCATATCGTGATAGTATGCTACGCGATCAAATTC 52975 29 100.0 35 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAA 53039 29 100.0 37 ............................. TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG 53105 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 53170 29 93.1 0 .......................A....C | C [53193] ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAAATTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGTGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGTATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAAATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGTGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAGTAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCAAAAAATAAAAAGGCCAGGACCCAAATCCAAGACTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCACAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTTGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCACCTGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //