Array 1 50-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000093.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_93_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 33 ............................ CGTGCGGGTCTCAGGTAGATGTCGAATCAATCA 111 28 100.0 33 ............................ TGAATACGATTCAGACGGCACACAGTCCAGTGA 172 28 96.4 0 ...........G................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 34 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : CATGCGGGGGTGATCCCGACTTGGACGCGCTCAACTATGATCTTTTCCTG # Right flank : CC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9696-9845 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000081.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_81_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9696 28 100.0 33 ............................ TACGTAACGGCCGTTGGGATCGGTCCAGCGGTA 9757 28 100.0 33 ............................ CCAGTTCGCAAGTATGCTGCCATTTGCTCTTGA 9818 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCATCATATCGAGGTGGGGTATATCAGCACGGAGTTTTCCCCGCACATGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1236-1404 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000114.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_114_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1236 37 100.0 29 ..................................... TATCTGCTTTAAAACGACTCGCCACGTCC 1302 37 100.0 29 ..................................... GAAAAAAACGGACAAAAAAAAATGAATGA 1368 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCA # Left flank : TCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGTACATTAAAATCCGGTTATAAAAAATCGGTTTTAGAAGGATGTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAATAAGGTTAAACCCCAGCGAGTAGTACAATATGTCGCACGTGTT # Right flank : | # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 382-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000113.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_113_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 381 27 96.4 33 -........................... CTTCTTAATTTGCTCTCGTTTATTTTATTATTT 321 28 100.0 33 ............................ CCCGCCAGACCCCGAAGAAGCCGAGAAAAACAA 260 28 100.0 33 ............................ CGAAATGGAGCAATACTTCGAGACACTGATTGA 199 28 100.0 33 ............................ CCAAGCCGAAGAATAGCCGAAACAGCGCCTCTA 138 28 100.0 33 ............................ AGACGACGCTCAAGTGTCGACGCCCTCGAATGC 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : | # Right flank : CTGACTGCGTATGAATCAAACAATGACCGAAGCTGTTTTCCCCGCACATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 330-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000104.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_104_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 329 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 268 28 100.0 33 ............................ TATACCATTTTGTTTCATTTGCTTTTTCTAATT 207 28 100.0 33 ............................ CCTGAGCAGTGCCCAGAATCTTGATTGCTTGTT 146 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 85 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : ACATGCGGGGGTGATCCTACATATGCAATTTTTCCACTAGTAATAGAAA # Right flank : CCTAGGGGGTTAGATAATGCGAGCAATAAGCGTAGTTTTCCCCGCACATGCGGGGGTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 50-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000121.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_121_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 33 ............................ TCACAGCAAACAGCCAATTCATCAGCAACAGGA 111 28 100.0 33 ............................ CGTAATCGATGAATAGCCAGAAGTGCCGGCCTT 172 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : CATGCGGGGGTGATCCTGTTGATTAAGCGGCGCACAACCGTTGTTCCAGG # Right flank : TTTGCCTAAAACAATCCAATTCTATCCGTGGCTGTTTTCCCCGCACATGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000105.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_105_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.6 32 .G........................... AACTCGCCTATATTCTTCTACTATGGCGAAGA 73 29 100.0 32 ............................. AGTGCGGCGAATAATAATACCAGTCCGGCAAG 134 29 96.6 33 ............................T CATAAAGAAGGAGGTGATGATGAGTGGCTAGTG 196 29 100.0 32 ............................. ACCGTTTTTGCAAATGGTCAATGACGGTTTCA 257 29 100.0 32 ............................. AACGTTTCGCGTAATCTTAGCAAACACTAGAT 318 29 100.0 32 ............................. TTATTATATTTTGGAATGGCGTGCCGAGGTTT 379 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.6 32 GTTTTCCCCGCACATGCGGGGGTGATCCC # Left flank : ATTGCTTAATGG # Right flank : | # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1328-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000066.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_66_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 1327 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 1266 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 1205 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 1144 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 1083 28 100.0 33 ............................ TTTATTAGAACTAGCTGAAGATGGAACAACTGA 1022 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 961 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 900 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 839 28 100.0 33 ............................ CGGTCACACGTTTGATATCTATGCCGAATCATT 778 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 717 28 100.0 33 ............................ CAGTTCCTACCTGACTGTCCCACCAAGGTGCCG 656 28 100.0 33 ............................ CGCAACCGCCGGGATTTGAACCCGATAAGGCCA 595 28 100.0 33 ............................ CCATGCACGGGCAACGGCTACTTGGTTGTCAGC 534 28 100.0 33 ............................ CGAACGTAACAACGTGGCCACCATGTTTTCGCG 473 28 100.0 33 ............................ CCGCTGTAAGATTTACATATTCTTGAGAATTGT 412 28 100.0 33 ............................ TCGAAAGAGGTAGAAAACATGAAAACAGCAAGC 351 28 100.0 33 ............................ TCCTAAGCTGGCTTTGTTGTTAGGCATTAAAAA 290 28 53.6 63 ...............NNNNNNNNNNNNN NNNNNNNNNNNNNNNNTGCGGGGGTGATCCTACATCAACAAAGAGTATGACGTCAGCGGCACC 199 28 100.0 33 ............................ TCGCCATTTGTGAAACATCTTGTATTTTCCAGA 138 28 100.0 33 ............................ CTATTATGGCGCATTAAATACTAGTTGACATTC 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================================== ================== 21 28 97.8 35 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GTGATCCTGCTCACCGCGTGGCTTAAGCTCAGCACCTAGCAGTTTTCCCCGCACATGCGGGGGTGATCCTGCCGATTTGCAAACGATCGAGCGGTTCTCCAAGTTTTCCCCGCACATGCGGGGGTGATCCCCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTTGTTTTCCCCGCACATGCGGGGGTGATCCTCAAAGCCCACATTAACAAGGTTGCCATGACGAGTTTTCCCCGCACATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCGGGGGTGATCCTACCAGCATCCTCAGCAGTGAATGTGTCCTCAC # Right flank : CTGAAATATCGTAAGAAGCCGGTTGAAATTGAAGGTTTTCCCCGCACATG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2215-1637 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTYT01000066.1 Lacticaseibacillus paracasei strain DTA93 CXA_S29_R1_001_paired_trimmed_paired_contig_66_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2214 28 100.0 33 ............................ TCAACATGTACATCAGTATCCGGCAGAAAACCT 2153 28 100.0 33 ............................ TACCAGCCAGCCTACGATGCAATGGTCAACGTA 2092 28 100.0 33 ............................ CGTGAGCGAAACAGAGTTCACAGAACTTTTTAA 2031 28 100.0 33 ............................ CGACATTAAAGAACTTCGCAAGGCAATCAGCGA 1970 28 100.0 33 ............................ CATTGCTGTGCTGCCACAAAATATCAACATTGG 1909 28 100.0 33 ............................ CACCATCCTTGCCGGCAACACCGTCAGCACCGT 1848 28 100.0 34 ............................ TGCTCACCGCGTGGCTTAAGCTCAGCACCTAGCA 1786 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 1725 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 1664 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : ATGCGGGGGTGATCCCGACAGAACAGACAGGTTCAATGCTTATTGGA # Right flank : TCAAAGCCCACATTAACAAGGTTGCCATGACGAGTTTTCCCCGCACATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCGGGGGTGATCCTACCAGCATCCTCAGCAGTGAATGTGTCCTCACGTTTTCCCCGCACATGCGGGGGTGATCCCAAAAACCCCACAATGTCATCGTTTAACCAGTCGTTTTCCCCGCACATGCGGGGGTGATCCCGGGTAGTTGAACTGATTGACCGCCAGCAGTGAGTTTTCCCCGCACATGCGGGGGTGATCCTGACAAATAGATATTTGCAACGCTTGGACAAACGTTTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //