Array 1 221826-216913 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFLM01000004.1 Silvanigrella paludirubra strain SP-Ram-0.45-NSY-1 NODE_4_length_614098_cov_43.231244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 221825 29 100.0 32 ............................. GTGTTATTTTTAAAAAAAATATTTCTCTTACA 221764 29 100.0 32 ............................. CTAAATGCTGAGGAACTTCTATTATTTCTGGC 221703 29 100.0 33 ............................. AACATCAAAAACAGCGTCAATGATATCTGTTTC 221641 29 100.0 32 ............................. TATTTACAGTAAAAAAGATAATATTTTCCAAT 221580 29 100.0 33 ............................. TAGAAATGAAACGAATAATATTAATTACAGTAT 221518 29 100.0 32 ............................. ATGTTTAGTTAAAAAAAATATATTTAATTCAA 221457 29 100.0 32 ............................. AAATATTGGAGTAAATAAATGAGATCAAACCT 221396 29 100.0 32 ............................. TAATGCTTAAACGTATTGCTTTGGGAAAAATT 221335 29 100.0 32 ............................. TATTTAAAAGCCGACAATGAATTGATGGACTC 221274 29 100.0 32 ............................. GCTTCTATCTTATTGTCTAGTGCTTCAATGAG 221213 29 100.0 32 ............................. CTTTGGCCTCTGGAATTTGTTCGCCTCTGTAA 221152 29 100.0 32 ............................. AACATTCGTCAAGTAGTAGTCGGACAAGAGAA 221091 29 100.0 32 ............................. CTACTTCGATAGGGCATTTTACAAATGGCATT 221030 29 100.0 32 ............................. TTGAAAAAGATGTAAAGGTTTATTTTGAGTCT 220969 29 100.0 32 ............................. TTAAGTTAATCCGTTACCATTCGGGTAAAGAG 220908 29 100.0 32 ............................. TATCTCCAGTGTGGTAAATGTTCTCATAAACA 220847 29 100.0 32 ............................. AACCCATCTAATGAAAAAACAACTAATTGCCC 220786 29 100.0 32 ............................. AGTCTGATAGTATTTAAATATGGAAGGGCAAG 220725 29 100.0 32 ............................. TTGAAAATCTAACTTCAAACGTTGATAATATT 220664 29 100.0 32 ............................. TTATATAGGCGTGGCAATGGTTTGTCATGCTA 220603 29 100.0 32 ............................. AAAGTTGACACGGCTCTTGACAATGAGTTAGG 220542 29 100.0 32 ............................. TAGATAATTGTATTAATTTTACAGCTAAAATA 220481 29 100.0 32 ............................. CTAGTACGCTACCATTCGGGTAAAGAGCTAAC 220420 29 100.0 32 ............................. TCTATGCAGAATGGGCACCGTTTGCAAAATTG 220359 29 96.6 32 ............................T TGCCCAGGGGTAAATATTTTAGTTGATGAAGG 220298 29 100.0 32 ............................. GTGCTTAATTCCTATAGAAATGGAACATTAGA 220237 29 100.0 32 ............................. TAGGTGAAACTAAGGTACAGGTTAAAACACTG 220176 29 100.0 32 ............................. ATTGGGTCAATGAAAACTTCGGTATCTGGGTT 220115 29 100.0 32 ............................. CTTGCAAGTCAAAAAGTTTCAACCAAGAGTTT 220054 29 100.0 32 ............................. CTCTCTGTTAAGTGATACGTCGGTAGAATCTC 219993 29 100.0 32 ............................. AAACAGGTAGAGGGATAATCGAAGTAAGATTA 219932 29 100.0 32 ............................. TCACTAAACGCAACACTAAAAGAAGACTTGTA 219871 29 100.0 32 ............................. ATAGTTGACGGTAACAAAATACCAACTTTTGA 219810 29 100.0 32 ............................. CTGTTGTTGCTGCATTAAATGATGTAAGAGAT 219749 29 100.0 32 ............................. GAATCATTTTTTAACTCTTGCCTTATGCCTGC 219688 29 100.0 32 ............................. CTCCAGTATTTGACGATCTTTGAAATCGACTG 219627 29 100.0 32 ............................. TTAAGGAGGCAGAAACAGCAGAGAATGGTAAA 219566 29 100.0 32 ............................. ATATTGTTATTAAGCCTTTTACTAATAATATC 219505 29 100.0 33 ............................. ATTTGATGCTTGGAAGAATTAAAGATGAAAATT 219443 29 100.0 32 ............................. ACAAGCAATAGAGAATTTAACAAAAAAAGGAA 219382 29 100.0 32 ............................. AATTAGCGGCTAGTCCTGATAACGCATATGTG 219321 29 100.0 32 ............................. ACGGGTGTTTCTCTTGTGTCCGAGTTTCAAGA 219260 29 100.0 32 ............................. TTATTTGATAAACATCCCAGGACGATAGCTGA 219199 29 100.0 32 ............................. TCAACTTGACGATCGGTAGCGGAGCGTCTGTC 219138 29 100.0 32 ............................. TACGAGAGCAGTAAATTCTATTTCTAAAAATT 219077 29 100.0 32 ............................. ATAATATTAATAATGAAACTTCATTAGACAGT 219016 29 100.0 32 ............................. ATAGAAGCAAGAGAGGGACAACCAACATGATC 218955 29 100.0 32 ............................. TATGTAAAAACAATAATGCTCATGAAAGATCA 218894 29 100.0 32 ............................. GTTCGTTTCAAAACCCGTATTTTGTTAGTTCC 218833 29 100.0 32 ............................. TTATTATTACTGGTGGCGGTATAAATCATCCT 218772 29 100.0 32 ............................. TATCAAAAAGTGTTTCTTTAAGTAAGAAAAAG 218711 29 100.0 32 ............................. AACAAATCCATTCCAAAGGCAGATTATTTTTG 218650 29 100.0 32 ............................. GTTTCCTCTATCTCTATATTCAACAATTATAC 218589 29 100.0 32 ............................. TATTTCCAATGGTCAACAGTCTCGATGTAACC 218528 29 100.0 32 ............................. AAGGTTAAAAAGGAAAAAGAAGAAAAGCCTAA 218467 29 100.0 32 ............................. GTAACGTCAGATTCTTTCAGTTGATTGCCATT 218406 29 100.0 32 ............................. TTTAATGTTATTGTACCACGACAATTCCTGAA 218345 29 100.0 32 ............................. ATGATCCTAGAAACCGCTCAAATTCTATCCAC 218284 29 100.0 32 ............................. TTTAAAGCATGAGAGTATATAAATAAGGAAGG 218223 29 100.0 32 ............................. TGCTATTCAAGTGGCAGAATTTTTTCAAAGCC 218162 29 100.0 32 ............................. TTGGAGTTGCCTTTAAATCATCAAATGAGGCA 218101 29 96.6 33 ............................A GCTGATAATTAATTTGTGCTTTAACTGCATGGA 218039 29 100.0 32 ............................. TAGCTATTGATCTTGAAACATGAGATTTTTGC 217978 29 100.0 32 ............................. TGATCGCTATCAACTTCTACTTCTATGGTGGC 217917 29 100.0 32 ............................. TGATTAAGCTCTTGGATTCTCTCTTGTGTTTC 217856 29 96.6 32 ....................T........ GAGGCTGTAGAGGGAGGACAATTCTTTAACCT 217795 29 100.0 32 ............................. ATGTTGTGAATTGCTAACACCGCCGACAGCAT 217734 29 100.0 32 ............................. TGAGTGAGCTTGTTAGTCCTAAAGATCAGCTA 217673 29 100.0 32 ............................. AAACTTAAAAAGGGAGCAAAACAAAATGAAGA 217612 29 100.0 32 ............................. ATTGTAACGACTATCAAATCATTTTCTTGTAG 217551 29 100.0 32 ............................. CTGTCAGGATTAAAATCATTAATAAAGATTCT 217490 29 100.0 32 ............................. TCATCATCTGCTTTTTCACCGAGCAACGATTC 217429 29 100.0 32 ............................. ACTGCTTTCTAACCAATATTCTTTAGGGTGAA 217368 29 100.0 32 ............................. AGGGAACTTAGAGAAATAGAAGACATAAATTC 217307 29 100.0 32 ............................. TATTTGTCCCACCCAAGCCACCAGAGCCAGAC 217246 29 100.0 32 ............................. TTCTCCGTTTAGTGATATATCGGTAGAATCTC 217185 29 100.0 32 ............................. TGGTAAACGATGCCGTAGTTGAATATTACAGC 217124 29 100.0 32 ............................. AGATTTTCTTAAAAGAAATTATGGAACTTCAC 217063 29 100.0 32 ............................. TGCAATTGAAGTGGCAGAATTTTTTCAAAGGT 217002 29 100.0 32 ............................. ATTTAGGCACACAGAATCTAAACGTCAATTAG 216941 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 99.9 32 AGTTTCCCTACGCACGTAGGGATGATCCG # Left flank : GGATTGCTGATGATATTCAAGATATTATAGGTGAAGAGAATGATAACAAATTTCAATTTGATTCAGATCCTGCTGCACCAGGGTATTTAGCTGGCGAAGATTCCCTAATGCCCGGAGGAAAAAACCATGGTGGTAATCATTCTTGAATCTGTACCTCAAAGCCTTAGAGGTGAACTTAGTAGGTGGTTAATTGAGCCCCAAGCTGGAGTATTTGTTGGTAACGTGTCAGCTATGGTAAGAGAAAAAATTTGGGCTAAATGCCAAGAAGATTCTCAAGGTGGAAAAGGAACGTTAATTTATAACTACAATAATGAACAAGGATTTGAAATGGTTTCATTTGGGGATTCACGAAGGCAAATAACCCTATTTGACGGCCTTTTTTTAATAAGGATGAACAAAAACTGACTCAAACATGTAATTTGATAACCAAATATCTTATTTTTAGATGTTTAGTTGACATAACTAACATCTTTTGGAACATTCTTGAATAATGTTCTGCT # Right flank : GAATTCTTGGACGAAAACTACCGGATTATGCAGTTGTAATTAATGAAACTTTTTTATTCTTGAATTTTAAAAATTTGTTGCAAATAAAATTTTTTGCAGATATTATTAATCAATACTATTCCTTATTTATCGTTGACAAATAAGGATTAAAATTAAGGAAAATAAATTTTTTATTCCTATTTGTAAAAATAAAAAAGCGAGATTACGATGTTTGTTTCTGACATTGATTTACAAAATAAAGAAATATCTCGATTAAAAACTTTGAATACTTCGAATTTTATTCAATTAAATCAAGATAGTATTATTGATAGTGCCGTTTGTACAACATTATGTGTATTACTAGATGTTTATTTAAGAAAAAACGTACCATATTTTAATTGTGTACCTGTTTTTTTTTAATAATATTAAAAAAAACTTAGCCTTTATTAAAAATGCTCTTAAAAATCAAAAAATGTTATTATGGAAATACATAAAAAACAACAATCATCAACTTATTCGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCCTACGCACGTAGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //