Array 1 79-1388 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGN01000283.1 Escherichia coli strain KCJ3855 NODE_336_length_1557_cov_3.52937_ID_671, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 140 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 201 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 262 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 323 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 384 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 445 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 506 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 567 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 628 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 689 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 750 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 811 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 872 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 933 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 994 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1055 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1116 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1177 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1238 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1299 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1360 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19-412 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGN01000170.1 Escherichia coli strain KCJ3855 NODE_47_length_25863_cov_4.52417_ID_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 80 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 140 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 201 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 262 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 323 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 384 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCCGGTGTCAGCAAAAG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8528-8983 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGN01000026.1 Escherichia coli strain KCJ3855 NODE_187_length_9005_cov_4.34625_ID_373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8528 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 8589 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 8650 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 8711 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 8772 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 8833 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 8894 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 8955 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGAATCTGGACACTGCATATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //