Array 1 425321-424393 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTBD01000001.1 Pseudomonas aeruginosa strain CCUG 59347 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 425320 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 425260 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 425200 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 425140 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 425080 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 425020 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 424960 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 424900 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 424840 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 424780 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 424720 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 424660 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 424600 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 424540 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 424480 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 424420 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 182412-184000 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTBD01000006.1 Pseudomonas aeruginosa strain CCUG 59347 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182412 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 182472 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 182532 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 182592 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 182652 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 182712 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 182772 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 182832 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 182892 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 182952 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 183012 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 183072 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 183132 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 183192 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 183252 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 183312 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 183372 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 183433 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 183493 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 183553 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 183613 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 183673 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 183733 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 183793 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 183853 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 183913 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 183973 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 193931-192526 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTBD01000006.1 Pseudomonas aeruginosa strain CCUG 59347 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193930 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 193870 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 193810 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 193750 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 193690 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 193630 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 193570 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 193510 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 193450 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 193389 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 193329 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 193269 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 193209 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 193149 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 193089 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 193029 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 192973 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 192913 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 192853 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 192793 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 192733 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 192673 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 192613 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 192553 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //