Array 1 566181-565311 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDH01000008.1 Providencia rettgeri strain APW127_S1 2_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 566180 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 566120 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 566060 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 566000 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 565940 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 565880 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 565820 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 565760 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 565700 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 565640 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 565580 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 565519 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 565459 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 565399 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 565339 28 89.3 0 ...T......A.........T....... | G [565313] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCGACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGAATAACCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACTCCTAGCATACTGATACCTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 576407-574818 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDH01000008.1 Providencia rettgeri strain APW127_S1 2_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 576406 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 576346 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 576286 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 576226 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 576165 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 576105 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 576045 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 575985 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 575925 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 575865 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 575805 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 575745 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 575685 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 575625 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 575565 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 575505 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 575445 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 575385 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 575325 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 575265 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 575205 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 575145 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 575085 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 575025 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 574965 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 574905 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 574845 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //