Array 1 461724-462771 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWW01000019.1 Cronobacter sakazakii strain CE56 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 461724 28 96.4 32 .................T.......... TTAAGCAGTCATCTCGCAAGGCTCGCGGAAGA 461784 28 100.0 32 ............................ ACGTGGCTTCAGAACAGCCAGGACAGGCCGAA 461844 28 100.0 32 ............................ ATGCCGGGAAGCGTGCCATTCGCGCGTTGTGG 461904 28 100.0 32 ............................ TCCAATCGCGGCCAGACCAACGGCGGCACCGG 461964 28 100.0 32 ............................ GCGCCAGTTTTGTTCGCACTGCCTGCGCTGTC 462024 28 100.0 32 ............................ AATACGCTGTCAGGGAGGCCGATAAGGGCAAT 462084 28 100.0 32 ............................ GACGTGGCCGCCTCCGCTGCGGTTGAATACGA 462144 28 100.0 32 ............................ AGAGTATCTACCCAACTATCCTGGCACTGTTC 462204 28 100.0 32 ............................ AGAGAACGCCGAGACGTCAAGGCCGCTGTTTT 462264 28 100.0 32 ............................ AACGTGCGCACTCGACGTCGCCCTCCGTTCCC 462324 28 100.0 32 ............................ GCGGAGACAACGTTTTTTACAGCGTGCTGGAG 462384 28 100.0 32 ............................ TGTTCGTGATAAGTGACAAGCCGACGGAAATT 462444 28 100.0 32 ............................ AGCGCCAAAGGCCGCGCCGCCATGCTCGCAAC 462504 28 100.0 33 ............................ GGAAACGATGGCCGAAAATTTCCCAATGTTTCA 462565 28 100.0 32 ............................ ATCGCCACGGAAGGCGAAAACTCCTCGCTTCC 462625 28 100.0 32 ............................ CACCAGAGATTAGAGAACGGTTTTGATTCGCC 462685 28 100.0 32 ............................ TCCACGCTGCCAGCCCGCAACCGATACACAGG 462745 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCTCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAAGATTCGCTCTT # Right flank : AATCACAGCGAATTCCCTTGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGACATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 781331-780936 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWW01000015.1 Cronobacter sakazakii strain CE56 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 781330 29 100.0 32 ............................. TGATCAACATCTCCGGCGTGGCGTTAATAATC 781269 29 100.0 32 ............................. TGCAGGCCACTGGATCACAGCCTTGAAACGGG 781208 29 100.0 32 ............................. CTCGCGCTGGGCGAGGCTGTGCAGGTCGTGGG 781147 29 100.0 32 ............................. CAGAGGGAATTGTTGCCGTACGCGCAGAACGC 781086 29 100.0 32 ............................. CCGTCACCCTTAGCTCCAAAATCTTTGACGCT 781025 29 100.0 32 ............................. AACATAGAGAACGCGGCACAGAAGAGTTTCCG 780964 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGATTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 807398-806271 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWW01000015.1 Cronobacter sakazakii strain CE56 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 807397 29 100.0 32 ............................. ATAACTGGGGGACGCAATGAGCACCGCCAAAA 807336 29 96.6 32 ............................C CTATTATATACACACTAAATTACGCGTCTAGT 807275 29 100.0 32 ............................. GCGCAGATTGAGGCAGGCATGCGCCATGCCAG 807214 29 100.0 32 ............................. GCGTCTTTCTTACGGTCAGTCTTGATACCGCG 807153 29 100.0 32 ............................. AAAATTGTTTGGCTGTTTTTTGTCATACAGGT 807092 29 100.0 32 ............................. CGCTCTCACCGTTTGCGTTTAACGACCAGACT 807031 29 100.0 32 ............................. GCGTTAAAAGCATCAATGTGCCTGAAACTGGC 806970 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 806909 29 100.0 32 ............................. TGTAACCGCAGTATTAACTCAACTGGCGCGCA 806848 29 100.0 32 ............................. ATCATGTATTCGGCGTTAATGCTGGTTCCTTC 806787 29 100.0 32 ............................. GGTATCCAGCCGAGCGTGCAGCAGACGGCGGA 806726 29 100.0 32 ............................. CCACAATTCCCAGCAGGCTCGGAACGAAGGGT 806665 29 96.6 32 ..................A.......... TACCGCCGTAACGCCGTGGCGCGTGCGGCAAT 806604 29 100.0 32 ............................. TACAGCCAGACTCATAACATGCTCGTCATCGC 806543 29 100.0 32 ............................. TTTTTCTGCTATATCGCGCTGCTGATCGTTAG 806482 29 100.0 32 ............................. ATTCAACACAATCCGCCCCATCCGGGGCAAAT 806421 29 100.0 32 ............................. ATTATTGGGAGACTCCTGCACTTATTACTGCA 806360 29 96.6 32 .....T....................... CGCCTCAAAATTGGCGTGGGCCTTTTGCTGGT 806299 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACTAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGATGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAATAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTCCCCGCCATCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACCATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACATCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //