Array 1 259-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQM01000118.1 Acinetobacter baumannii strain 485 Abau485_S76_R1__paired__contig_210_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 258 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 198 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 138 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 78 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ============================== ================== 4 30 97.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCATACGCCATTTAGAAAGTATTAAAACTGCTTATAAACTTTCTTAAAT # Right flank : TTGTCTGATCCGACAATTTGGCTGAGTACGTGTTCATGGCGGCATACGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 398-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQM01000046.1 Acinetobacter baumannii strain 485 Abau485_S76_R1__paired__contig_211_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 397 30 96.7 30 .............................G CATAAGCATAAAAATTATGTGTGAATATCA 337 30 96.7 30 .............................A TATGCAACAATAGGAAATTGCTCAGCATCT 277 30 96.7 30 .............................G TTACATCATTGCTTTTAGTCTTTTCTATCT 217 30 100.0 30 .............................. GGGCCGCAACCATACGGTCTATGACTTCCA 157 30 93.3 30 ............................TC ATGATCATAGCCCTTATAGATATCGTATTT 97 30 100.0 30 .............................. AAGAAAGAGCAGTTATAGATGTTGATAAAA 37 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ============================== ================== 7 30 97.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : CATTTCGGCATACGCCATTTAGAAATTTTTCATAAATTATGCTTCTTTAATTTTTT # Right flank : TAAGAGAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8004-7494 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQM01000182.1 Acinetobacter baumannii strain 485 Abau485_S76_R1__paired__contig_21_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 8003 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 7943 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 7883 30 100.0 30 .............................. CTCAAAGTAAAGAATAAAACAATATACCGC 7823 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 7763 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 7703 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 7643 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 7583 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 7523 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== ============================== ================== 9 30 89.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCATACGCCATTTAGAAACCAAAAAATGAGGAAATTGGACAATATCCAAC # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //