Array 1 39497-41234 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUKM01000003.1 Shewanella algae strain JFC2 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39497 29 100.0 32 ............................. GTGGAATTTTTAAATAGGCAGGGAATAGAGGT 39558 29 100.0 32 ............................. GCTATCGCGCCGCGCACGCAATTTATTTCAGC 39619 29 100.0 32 ............................. GTACTCGTGCAGAACTGGCGGTAACCGGTGGC 39680 29 100.0 32 ............................. GCGCTTTATGGTTCTTGTGACGCTTATCCAGT 39741 29 100.0 32 ............................. CCCTGCAGGCCACTATGTCGGCGGCCTACACC 39802 29 100.0 32 ............................. TCCATATGTGACAACCTCGCCCACTTGCGAGC 39863 29 100.0 32 ............................. GTGCTGCATTGACACATCACCCGCCCAAAACT 39924 29 100.0 32 ............................. GAAAATTGTTTTGCTATCTATCGAATAGAACT 39985 29 100.0 32 ............................. TTTTTTTGTTGGCCGGTTGGTTGTCTGTAATG 40046 29 100.0 32 ............................. CTACAGCAGGATAGAGACAGGCGCAGCACAGC 40107 29 100.0 32 ............................. ACGGTGGTAAACCAGCCGTCATCCTCGGTAAT 40168 29 96.6 32 ............................C CAAACCACACCGGAAGGTGAGCGACTGCTTAC 40229 29 100.0 32 ............................. AACGGTAATGAGTTGCGGTTGCCGTTGACCAA 40290 29 100.0 32 ............................. ACCACAGCAGTGCCCGGATTATCATTGCTATC 40351 29 100.0 32 ............................. CGCGCTCATTCTCACTTGGTACCAGCTCAAAA 40412 29 100.0 32 ............................. TTCTATTTTGCAGCTGAGGTGCGCCGGGATCG 40473 29 100.0 32 ............................. TCGGCGCGGGTTGGCTACACCAAAATGCTGAT 40534 29 100.0 32 ............................. GTTACAAAACCACCAGGGTGATTGATCACGCC 40595 29 100.0 32 ............................. CCAGGCAACAGGCTCTGGTTAATAAGTGGAAG 40656 29 100.0 32 ............................. GTAGAGAGGGCGAATTATTGCGAAATCTTGAT 40717 29 100.0 32 ............................. TCCAGCATCTGGGCGAAATCAGGCAATGCACT 40778 29 100.0 32 ............................. TCCAGCATCTGGGCGAAATCAGGCAATGCACT 40839 29 100.0 32 ............................. TCATGGCTTGGAACCGTGGTGAATATCGTGTT 40900 29 100.0 32 ............................. CAGTTAGGGAGGCCAGGTTAGATTTCGAAAAA 40961 29 93.1 33 ...........................GC CACCAAAACCGTTATCACGCTGGATTTCTACAA 41023 29 100.0 32 ............................. TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 41084 29 96.6 32 .........A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 41145 29 96.6 32 .T........................... TCAAGCCAAGCGGGAATGAAGTTGCAACTGAC 41206 29 89.7 0 .T........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : AGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACAGCTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGGGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATTGCTTAAAAAACAATAGTATTTATCAAGA # Right flank : GTATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTACCTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGAAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //