Array 1 49838-49565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMMA010000046.1 Chromobacterium violaceum strain CR2 contig_0000046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49837 29 96.6 32 ............................A GGACCAACCGTGCCCATCTGGAACTAATCGTG 49776 29 100.0 32 ............................. TCATTCCGTCCGCTGGCGGCATCCGCATTGTC 49715 29 100.0 32 ............................. TCGTCGTCAATCTCGGCCACTGCGCGCACCAG 49654 29 89.7 32 ...........GCC............... ATCGGCAGCACATACACCGGCTTGCCCGGGGT 49593 29 72.4 0 ...........GCC......A...TG.TT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCTACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCCGCAAACCCGCTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCTCCGTGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTTGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCGTGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGAGTGGGTTTTTGTCTTTAAAAAAATCAGCATCTTAAAATTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCACGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTCGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTTAGCGGAGCCGTTGGTTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTGCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57936-57113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJMMA010000046.1 Chromobacterium violaceum strain CR2 contig_0000046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57935 29 100.0 32 ............................. CGCGACGGTTCGCCGGCTGCGCGGCCGTTGTA 57874 29 96.6 33 ............................C AGTTCGCAGCCAATGCCAAGACCAACGGCGTGC 57812 29 100.0 32 ............................. ACTTGAAGCGCCGTGGCCGCGCCGTCGGCAGC 57751 29 100.0 32 ............................. AGAACCACCGCCACCTGGCTACGGCCTTTCTC 57690 29 96.6 32 .........................G... AGAACCACCGCCACCTGGCTACGGCCTTTCTC 57629 29 100.0 32 ............................. GCGCGACCACGACCGTGGCGGTATTGCGGTAG 57568 29 96.6 32 .....T....................... CGGTTACGCACCTGACGCGGCACGGCGATTGC 57507 29 100.0 32 ............................. CATGGTGAAATGATCGTATCGCATTGCCTGGC 57446 29 100.0 32 ............................. ACCAGGCCCGGCCAGGTGCGCGGCGTGCCGGA 57385 29 100.0 32 ............................. GGTGACGTCCCCACGATTGGCCATGGCTCGAC 57324 29 100.0 32 ............................. CGGATTCAACAAGCGGCCGGGTTTTGGCCGGG 57263 29 96.6 32 ........T.................... GGCCAGGGTACATATTGTCCCGCTTTCACGGC 57202 29 93.1 32 .........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 57141 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.3 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGGTTTTGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTAGGCTATGGCTGCTGGCCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGAACCCTTGTGCAAGGGACGATTGGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : CGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //