Array 1 138129-138382 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000011.1 Calothrix sp. HK-06 NIES-2101_Scaffold_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 138129 37 100.0 35 ..................................... TAGAATCTTGGAATGAATATTTAAGCGGGATAATA 138201 37 100.0 35 ..................................... AAGAGATAGCTTGGTTGGTTTGTCGTTACATCAGT 138273 37 94.6 36 ......A...............A.............. CAGTCATTCAACAACTCCTCGCGGGCACTTGCCCTC 138346 37 94.6 0 ......A..................A........... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 36 GTTTCAGCGTCCATCTCAGCTTGAGGCGGGTTGAAAG # Left flank : GAATTAGCATTAAGTGCTTATCACGCGCGTAAGAAATCTTAATTTAAAAAACCGAACCTTGAAAATATAATAGTCATTAACAGCGCCGCAGTTCATGCGCCTTACGGCGCCTCTGTGCTGTGCAAAATGTGGGTTAGTTTGACTGTTGTCAGACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAAGCTGCTATCCCTTGTGGATAGGAATCAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACCGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTTTTATTTTTGGCAAAGCAAAGCGGGAGCTATTTTACCGGGACTGGCGCCAAAACTTTAAACTCCTTATTTAACAAAGCTTTTGGATAAGGCACTGTCAGTTGATTTATTTTTTTAGTTTTAACTAACAAGCGATTTTGTCTGCCATGCCAAATTTGCTTCTCAGAATCTTGATAAGTAAGGAGTCTGAAGCATGGA # Right flank : GATTAGATACCCCAAGTAAGGATCTCCTCCCTTCTTTGTTTCTATTTTATTAAATAAGGTTTAATTATTTAAAATGAATATTTGATACTTGTAGTAATGGTTAATGTTATCGGTATTAACCACAGTGCTATTCTACTGTGGAAACTGGTCAGTTATTTTTGCCAGCCTGCACTAGCTCCGGGACACTAATCTGTTAATATTGACATCAATCTGTTAAATGTGACATTAATTTGTTAAGAGTGACAAATAATTAGTTAATGTACACGTGTATCAGAATATGGTATTAGTAAATTTACCAGAACTTAAAAGTGGAGTTGTTTGAATGACTGAACCACATAAAGCTAACGGTAATGCGGTTGAAGCTTGGCCAAGTCTACCATTCGATAAATGGAAGGACACGTATGCAACACTCCATATGTGGACTCAAATTATTGGAAAAATTCGACTTGTGCAAAGTCCATTCTTAAACCATTGGTGGCATGTACCATTGTACGTAACGG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCGTCCATCTCAGCTTGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 6725-4854 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000028.1 Calothrix sp. HK-06 NIES-2101_Scaffold_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6724 37 100.0 33 ..................................... AATCTGTATACAAAACTTTTACAACGCAAACTT 6654 37 100.0 38 ..................................... GTTCTAGAACAACCGGGTATTTTTAATCTCAAGCTTAG 6579 37 100.0 38 ..................................... CTTAGATTCATTCTGAAACGGGAAACATGCGTAATTTC 6504 37 100.0 40 ..................................... AACTTTAGATTCAAGATTTTCCTTGATGATATAGAGTTTT 6427 37 100.0 34 ..................................... GAAAACGGTTTACGGTCTGATAAACGAGCTGCTT 6356 37 100.0 34 ..................................... AGTCGCCAAATGATGATTAAAGATAACTTAATTC 6285 37 100.0 41 ..................................... TGGAGAACAGGCGCCATGTAGTGACCTTGGCGGTGTACTAA 6207 37 100.0 30 ..................................... GCGAAAGGCAGTAAAGCGACTATTTTACGA 6140 37 100.0 40 ..................................... ATCGACGGGTGGCTAAAACCATCTCGCTCCTTGGGTACAA 6063 37 100.0 36 ..................................... CTAAAAGAAGGAAGAAGAAAGAAGCAAGAAGGAAGA 5990 37 100.0 32 ..................................... CCGAATTCATTAAGGTTCGCTCACTGTTGTCT 5921 37 100.0 34 ..................................... AATCGCCAGCTAACGATAGGAAATTGTTTAAATC 5850 37 100.0 36 ..................................... CGGAGATACGGGCGCCGTTGTTCTAGTTCTGATTAT 5777 37 100.0 34 ..................................... ATTTCTTTATCTTGCAAAGTAATCACCCAATTGA 5706 37 100.0 35 ..................................... CCTCAATAATCGAGATTTAACTAGTTTTACCAAAA 5634 37 100.0 39 ..................................... GTATTGTGAACGAACTGTGTATTTTGTGGTAGGAATAAA 5558 37 100.0 34 ..................................... CCAGTATTTGTGACAGTCGGTGTTGTTCCCGGCA 5487 37 100.0 40 ..................................... ATTTTAGATTGATAATCAAATTTTGGCAAACCTTCACTAA 5410 37 100.0 34 ..................................... AGCATCACCTGTACCAGTGACGCTTTTTTTGATT 5339 37 100.0 35 ..................................... GGCTCTATTTTAGGGGCTTCTAATGGCTCGGTTGG 5267 37 100.0 34 ..................................... ATTAGCAGCTACTTCTGGAAGCCCTGTGCTGGGA 5196 37 100.0 40 ..................................... CGGAAGTGAGTAAACTTTATTTCAGCCAAAATGAGAACGA 5119 37 100.0 38 ..................................... AAATAATTTCAACCATTCGGTTTGGGGAATTGTGCCAA 5044 37 100.0 41 ..................................... ACATTTGGAGGTAGCACAATTTCTTTAGTTAAATATAAAAA 4966 37 100.0 38 ..................................... ATTTTAAATCTGCTTTGAGCAAAATAATAACCACTAAA 4891 37 97.3 0 ....................................T | C [4856] ========== ====== ====== ====== ===================================== ========================================= ================== 26 37 99.9 36 ATTGCAATATTAAATAATCCCTGAAAGGGATTGAAAC # Left flank : CGCGACACAAGCAAACCGAATGCAACTTTATTTCCCTGTCGCGATAGAAAAACTAACTCCAGATCACTGTGTTCGGACATGTCTCCCTCGCTAAACAACTCTATCTATATAGTGGCAAGCTAGAGGAAAAAGGTTACCTTGATAAAAAAATATGATGAATCGATTATTGCGAGTGCCATGACTCAGTTTTCACAACCAAGCTCGCACAAGCAATAATATATAGATAGTGATGCAAATTTTTTTGGTCAGGCGCCGCGAACCATAGGGTGTTTTTTTGGTAGAGTCCAAATTTCTTGTATAAGCGCTTGTCCAGTATAGCTTTGAAGCATTCCACCTATTTACAAGGTTCGCGGTAACTCTGAAACCCTTACCATAAAAACGTTTTAGTCATTTTGAACGGCGCCTGTCTTGACACATTAGCCTTTGAAACGCTATTCTTAGCCTAGGTTCGCGGAACAGCACCTTGAAAACTAAATACAGCAAAGCTTCTATGCCAAGCC # Right flank : AGGGTGCCACATTCATTATGTAAGATAAAGAAGAAAAATAATATTACTATATTATGATTGTTACAACAGGGAACGATGTTGCAGAACGCGCAATCAAAAATTACGTTGGTATAGTACGAGGTATTGTTGTACGCTCACCAACGATTGGACAAGGAATAATGGGTGGGTTGAAGCAATTAGTTGGTGGAAACATTGAAGCATATGCAGTAGCTTGTGAACAAGCACGGCAAGAAGCATATGACCGTATGATAAAACAAGCACAAAGTTTAGGCGCCGAAAGTTTGAAAATCTTGTTTGTAACAAATAAAGCCTAGTTTTTTTTATTACTTATCCGTTACATCCGTTCATCATCCGTTGCCAATATTTCTACTTTCCAAAATTAATGACACAGACCACTAGTATCTTGATCTAGCACAGGCATAATGCGAAAATTAAATACTTCTTGCCAAACATCTTCGCCATGTTGAGACACAAAACTGCTTTCCAGGTCTTGGAAACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATATTAAATAATCCCTGAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 29755-28643 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000036.1 Calothrix sp. HK-06 NIES-2101_Scaffold_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 29754 36 100.0 37 .................................... TAATTGAACATTTATAGTTTTGAGCATTTTTTGAACA 29681 36 100.0 40 .................................... GCAGCCTGAGAGTATCGTTCTCCTCTCTCAGGCTGCTGAC 29605 36 100.0 33 .................................... ATCATTGGCGGGGAAAGTGGCGCCAACTTTAGG 29536 36 100.0 34 .................................... TACCAGTTGGATATCGGCGCCACTGACCCCAGAT 29466 36 100.0 36 .................................... TATTACGAAAAATTGCTTAAAGGCGATAACTATTAC 29394 36 100.0 34 .................................... CCACTTAATTACACGATGGATTAATGCTCTAAAA 29324 36 100.0 34 .................................... AACCAATATAGAAAGTATTGGTGTTGATACGTAC 29254 36 100.0 35 .................................... TCTCCGGTATCGGGGGCTTGTCCTTGGGCTTTAAC 29183 36 100.0 36 .................................... TATTGCAGATACATTACCTATCTTACCTTTAATAAA 29111 36 100.0 35 .................................... CAATATTATATAAACCACTTTCATCTCTATATATA 29040 36 100.0 34 .................................... CTGCTACTGCTATGAAGAAGTGTCGTGCGCTTTA 28970 36 100.0 41 .................................... TTTTGTGATAAGTTTTGTGTTCAGGAAATACTGCTCAATCC 28893 36 100.0 34 .................................... AGGACAACAACGAACGGTAACTAAAACTGTATGC 28823 36 100.0 38 .................................... ACCAATATAATTTTTTGCCAGAGCATCTAGTAGTAAAC 28749 36 100.0 35 .................................... TAATTTGCTATCTTCGCTTGACTTACTTAAACAAC 28678 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 100.0 36 TTGATATTATTATTAATCCCTATCAGGGATTGAAAC # Left flank : TTAGTAACCTGATTTTAGGCGCCTGTCCATGCAATGGGCAGGTTAATAGCTCCAAAACTGTTATGCTGAGAAACAAAGCATCTCCAAAACTGTCATGAGTCGTGAACGTTAACGTAAACGTAGTTTTCCCGCAGGGTAGGATATCCGCTTATGGTAGGGTAGCATCTTTCTTACAGATTGTTACGCTTAGAAAAAAGTCAAGTTACAACCTGCATCTAGCATATTTAATCATGAGTATTTAAACCTACGTATATAGCCCTGAGTCCATGTATCCGCCGCGAAAGGGTAGGTGTAGAAAAATGGGGTTTGACAAAAATCTCTGTAAACCAGTGGAGGTAAGAGTTTTGACTATTATAAAATTAAAACGACCCGCGCACTTTACCAGCACTACATTTCAGCAATTTCACAAAAATCAAAATACTGTTTTACATGTTATGATGAAGTGGTTCGCGGAACCGTACCTTGAAAACTACATATCATACGACTTTCAGGCACCAGCC # Right flank : TATTTGAAAAGAATCGAATCAGCCTATAATTAAGGATGGAAGTTCCCATTGATTATTGATATTCAGGGTGAAGTCCTTAATCAAGAGTTATTTGACAAGCTTTTATAATATATAAATACTATGTTTCAATTCAATCAAAAATATTTCTATTTCACTCTTATATTATTTTTAGTAGAGGTATGTATAGCTGTTTTTGTAAAAGATATTTTTATACGTCCATTTGTTGGTGATATTTTAGTCGTTATACTAATTTATTGCTATATTAGAACTTTTTTGAATATAAAATCATTTATTGCTGCTATATCAGTTTTTATATTTGCTTGCATTATTGAAATTCTTCAGTATTTTAATTTTTTGAATAAATTGGGATTGCAAAACAATAAAATTTTAGCCATTGCCTTGGGTAGTACGTTTGACTGGAAAGATATAATTGCTTATGCTATGGGCACTATAATAATTATATGCTTAGAAAATAAAATAAAATAGTTATGTCTGATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGATATTATTATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 21041-20289 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000117.1 Calothrix sp. HK-06 NIES-2101_Scaffold_117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21040 37 100.0 34 ..................................... ACTATCTCCACCACCACCCGAATTAAATTGTGCT 20969 37 100.0 34 ..................................... GCTATTTATCACAATCATGAACTTAGGCTTTTTA 20898 37 100.0 36 ..................................... ATAATCAATCTTAAACTTTTCAGCGCTTGCAGTATC 20825 37 100.0 35 ..................................... CTAATTTTACGCAGCAAGTGGAATCATTGGCAAGG 20753 37 100.0 31 ..................................... AAGGATGTATTCGCTTCAATTAATTTATCAC 20685 37 100.0 35 ..................................... AACGTTTTCTTTGACCCATCTGTGATTAATTTCTA 20613 37 100.0 34 ..................................... CCGCAGAAAGATAGGCGCCAACTGTGGGATACAG 20542 37 100.0 34 ..................................... AACATACGCATTTTGCCACCACTCATTATCTACA 20471 37 100.0 37 ..................................... AAGTAATTTTAGATACGGCTCCAGACTATTATCCAAA 20397 37 100.0 35 ..................................... CTACAGGCATCGGCATAGCCTTGTATATATGGTTC 20325 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.8 35 CTAGCAATTATTAATAATCCCTTCTAGGGATTGAAAC # Left flank : TCGCCAGGGAGAAGCAATGGGGCGCCCCAGTCAACTTGTAGTAGATATCCCTGCCAGTGGCGGGATTGTCGTGACTGGTAAGGCAGTCCGGATTTGAGTAGGAGGAGTCATCCGGCAGAGGAGCCTCACCTAATACTAGTGTTTATATTAAAAGTGTAAGTAGTAATTTATACAAAATAGATGTAACTCGCTTGTTGCAGTGGTTCTACAGGCACCTTATATAATATACTTATACTCATTTGTCAGGCAATACCGCGAACCACCAGGTGTTTTTTAAGCAAAGTCCTTTATTTGTGACTAAACGTTTATATCGTAAGACTTTGAAGCATTTTATCTATTTCTGAGGTTCGCGGCAACTATGAAAGCCTTACCAGTTATAATTTTCAGCTATTTTAACCTATGCACCTATTGACACACCGATCCCCAGAACGCTATCTTTACTCTAGGTTCGCGGAACAGTACCTTGAAAACCAAATACAGTAACGGGTCGGCGCCTAGCA # Right flank : GCTGGTTAAATAATAATGTTTGACAGGCGCCTTATTGAATAATTGGTTTTGCTTCAATATTGGCGCCTTTCATATCGGAACGTAGCCTGTCTGAGAAAATAGTATTACTTTGCAACTAAATAAATTACTAGAGATATTAAAGTAAGCATCATAATAGCTATCAAAATAATGTTTACTCAAGCTAAAGAAGGTTTATCAGTTGAAAAAATCAGGCTATCTTTGCCATATACCCACAAAAGCTTAATAGAATTTTTGCCAAAGCAATAGATAATTTGATGAACGTTTACCGATTGAATCATCAAATGCTGAAAATGAATTTTCCTTTTTAAACACTTATTTTAATAATTTTCAAAATTTAGGTTTTTGATTACGTGAAATAACCTAGCTTACATAAATCTGCCCACGAGAGCGCCCAAACTTGCCGAAAAAATAAGAACCTCCATAGAAATGCCATTCGAGATTGCTTAGGATTTCGGCAGCATTCTCTTGTGTGAGAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGCAATTATTAATAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 12495-13040 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000013.1 Calothrix sp. HK-06 NIES-2101_Scaffold_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12495 37 100.0 37 ..................................... ATAACTTGATCTCCCTTGCCAATGCCGAGGCAGTGGA 12569 37 100.0 36 ..................................... TTTTTGACCGGGAGTTAATTGATTTGGGTCTAAATC 12642 37 100.0 35 ..................................... ATGAAGCTGCTATTTATTTCCCTAGCAGAGGCAGT 12714 37 100.0 36 ..................................... ATAATATCTATTTCTCTTTCCAACTCATGCTTAACT 12787 37 100.0 35 ..................................... AAGTATCGAGACGCAACTGAACTTCGGAACTAGAA 12859 37 97.3 36 A.................................... GACCCAACTAGCGCTAGTAAAGGAATAGTGAAAATA 12932 37 100.0 35 ..................................... TAAAACTAAGCTATTTGCTCAATTAGAAGCGGAAT 13004 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.7 36 CTTGAAACCTTACGAATCCCGTCTTCGGGACTGAAAC # Left flank : TCGATGAGTTACACCTTCTTGACCCAGAGCTATCTTTTACAACTGTTTTGAAAGTGTTACAGCAGGTTAAAGGTATTTCTCCGTTTTTGTTGATGACGGCTACTTTAACTGATGAACTTGCAGGGCAGATTAAAAATATTATCGATGAGTAATTTGATCCCCAATGGAAATAATTCAAATACAAAATGCTGATTTACAACTAATTGAAGTGAACCGTTGTCGAACATTCCGCGCGCTTCTTCAACCTCTAACAGCACAAATTATTTGGGATGACATCCGCGCGCATCAACGCAAGCGAGTGATAGTTATTTGTAATACTGTCTCTCAGTCACAGGCATTATATAAAGATTTAGAAGCACTCGACTTTGACTTTGAACTAAATATTACCCTGCTTCACTCAAGATTTTTACCTGAGCATCGTGCGGCAAAAGAGTCTGATTTAAAAGAAAAATTTGCTCAAAACTGGAAATTACATGATACAGGCGCCTGAAAGACCAGGA # Right flank : CTTTCCACAAGAATATCCTTTATATGATGCAATTTTTGAGGATATTATACTAAAAACGGCTTAAAACTATACTTTTCAAGCAAACGTAAATATTTAGGATGCTTCTACCTGGGCATGACAAAGTTCACTTTTTACCCGTTTGCAGTATAGCGCCGCAACGTATTATATTCGGGAGATTTGTTATCGGATTCAGTTAGCAATCACGATAGTAGAAGAAGATGATGGTACTGACCATGAACAGAGTTAGGCGCCAATTTATTGTTTTGCTTTCTATGGGTAATCAATAGCAAGTACTTTGACTATCGTTTTAGTATAAACTAACCTGAAAAATTATTCTATAGCATATGGCAATATTATTGTATGGTTTAAGTCGCTGCCCACTTTGTGATGGCGTTATAAATGAAGGTGATGAATTAGTGGCGACAACCCATTTTATTGGCGATTGGTCAGGTCTATAACGAAGTAATGAAATGTTATAGAGCGGAAGATTGGGAAGTTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTTACGAATCCCGTCTTCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 18374-17890 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000135.1 Calothrix sp. HK-06 NIES-2101_Scaffold_136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 18373 37 100.0 38 ..................................... AATTTATATTGGTGTTCGATGCGGATTTTGCGCCACGG 18298 37 100.0 37 ..................................... TTACAAAGAACATTGCTGGATTGTCTTCTAGTAATTT 18224 37 100.0 39 ..................................... GTAGGTAATCCCGTCGGAAGCCAGGGAAGTGATGAAGTT 18148 37 100.0 37 ..................................... TTGAACCCAGCACGAATTACTTCGAGCAAATCATAAG 18074 37 100.0 37 ..................................... CTCCTGTACAGAACGCAGATGGTTCATTTAACTTTCA 18000 37 100.0 37 ..................................... AACAGAGGCAATTTCTGTTTCGCCATAGTTTGTAGTT 17926 37 97.3 0 ................................T.... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 99.6 38 GTTGCTTCTCTCTTTGAGAAGTAGATTTCATGGAAAC # Left flank : CGGCTACGACCGCCAACTATGCGGCTCAATAAACGAACGTTCACCCATCTGGATAGCGCGCGTAGGCAGTCCATTTAAAGACGACGAAGGATTTGGCAAAAAAGGCTTCGACATAGTAACCATCTTCGGAGTCGATAACCAAAAACGCCAAACATACCTAAACTCCCTAACCCAACTACAACACCCTATCCAAGAATATCGAGAAATCTGGCACCTGTAATTTTCTACTAACTATGCTAAAAACCACAAAAATTCGTGAACCTAAGCGAGGAAATTGAACAACTCAAAAATGGCGCCTGTAACCCTTACATAGTAAGCAGCCCAGCCATTTTACTCAAAAACACCCTCACGAAAACGCTACAACCTTTACACCATATATGTTACAGCGATTGTTAACACAAACAATATTGACAACCCAAACGCTGAAACGGTACTTTAAGGTGAAGCTCACGAAAACTGGCGCCGAAACCCTTGTTATTCATCGTGTTGTAGGCGCCGGG # Right flank : ACTTTCTCTGTTTCTTTAATTTATTGGTGGTGCGTGACTGCTAGAAGATTTTTTGTTTTAATTACGATTTTTTGATGCAGTCACACACCCTACGTTTGGATTTTTGTTATTCGCGTGAAAAGAGGTGTAATTTGGGTTGAAGTGTTATAACTTACTGTTAATGGCTAAGTGGACAGGCGCCGTTATAAACTTTATTTTAGAAATACTATGTCAATCTTGATTGCGAACCTTGGTACATCTGACCTAGCTGTAAAGATACATGACAACTATTTTCCGCTTGAATTTAGACGAGAACCAAATACGATATATCCTCCTGTGGGTTCAAACGAAGAAGCGTTATGGAAACAGGGTGAAGATTACGTTAAAGAGTTTTTATGTGACGAACTTGAGTTTACTACAAAACCTACATTTCGAGATTTAACTGGCAAGATACTCAAAGGATATCAAGAAAACCCTGACTATTGGCATAAAAGGTTGAGTCCCGGTAGAATTTGGGGAGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTTCTCTCTTTGAGAAGTAGATTTCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 74216-73753 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000019.1 Calothrix sp. HK-06 NIES-2101_Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 74215 37 100.0 35 ..................................... GAGGAACGTCAGGAAGAAAGAATAAGAACTTATCA 74143 37 100.0 35 ..................................... CTTCTGTACCTTCTAGGGTTACTTTACAGATTAAG 74071 37 100.0 33 ..................................... AATATCGTACTTTCTTTCAAAAGGAATAAACTT 74001 37 100.0 34 ..................................... GATAAATTCTACCGTATCAACAACGAATACAAAC 73930 37 100.0 33 ..................................... TAATTAGCAAGTTGCGAAGTTTAATATCTTTAG 73860 37 100.0 34 ..................................... GAATAAATTAGGTAAGTAATGCCACGAATTAAAC 73789 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 100.0 34 ATTGCAATTTCTAATAATCCCTTTCAGGGATTGAAAC # Left flank : GATTGCATTTTTCCCAGCTTTTTCAATATCCGCACAGAAATTGCGAGTGACTCCCGCAGTAAATTTATAGGTTGTGTTGGGCAAGTAAGCTATAAAATTATGGGAGAAGTCGAATCAGAAGTCATCAAACAAATTAACGCTATAGCTGATTTTGCTCTGTACGCAGGAGTCGGCAGAAAAACACCAATGGGAATGGGAATGGTACGCAGGCAAACTAACTAGACAGCATTTTTCCTAATTTTTCCCATATCACCGCGAACCATAGGGTGTTTTTTAGATAGAACATCAATTTATGCCCGAAATGGTTATCCAATCAAGCTTTGAAGGATTTGGCGCCTGTAATAGGTTCGCGGTAACTCTGAAACCCTTGCCAATTAAGCATTACAGGAATTTTAACCCATGCCAATCTTGACACACCAACGCCTGAAACGCTATTCTTATTCTAGATTCGCGGTACAGCACCTTGAAAACCAAATACAGCAAAGCTTCCACAGCGAGCC # Right flank : TTCAAGTAATTGCTCTATTCCTCTATAATTAAACTCGAATTGCAATTTCTAATAATCCCTATAGCTTTAAGTCAATTTAGCTTGTACGTGCAACAAGTTACTAGTTACTTGGATTCTTTGGTAGTCGCAGAGCATGACGAAATTTAATCGCGACATTAGTCCATTTTAATGAACTTGGGCTATTAGCTTATGGTTTGCAACCATAAGCGGGTATGAGGGAAAATGTTTTTATTTAATCTGTAAAGACATGTAATCAATATTTTGATATTGATTATTGAATTTATACGCCATTTTTTCGATTCCATATATTTTAAAGCCAAATGATAAATACAGTTGTTTGGCTGGTACATTACTTGTCACTACATCTAGTAATAATATTTCTATCTCGTTTGTAGCTTTTGCTTTTACAATTAGTTCAGTTAGTAGTAATTCACCTATACCTTGGCGCCGATATTCAAGTTTGACGTACATGCTACGTATGTATGCTTTATGCTTTGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTAATAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 78008-75660 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000019.1 Calothrix sp. HK-06 NIES-2101_Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 78007 37 100.0 43 ..................................... AGATAAGAAATATTCTTTTGGTTAGTAAAAGCCTCTAATTACA 77927 37 100.0 38 ..................................... ATCAATTGCAGTGCTAAAGCCCGCATTTGTAAAAGCCG 77852 37 100.0 34 ..................................... TAAAATGCTGTAACCAGTTGAGATAAAACAACGA 77781 37 100.0 36 ..................................... TGGGGAAATGGTGAGCATCGATGTATTGATTGAATT 77708 37 100.0 33 ..................................... ATCATAACTCGCTATGCAGTCTAGTACAAAGCT 77638 37 100.0 38 ..................................... GAGTACTACTATAGATTAGATATTATGCACGCTTAGGT 77563 37 100.0 40 ..................................... TTTTTAGTCGTAGTGTTATCCTTCTTAGTAGAAGCTGGAG 77486 37 100.0 38 ..................................... AACTTTATATAATCTATATCTGCTTTATTCTCTAGCTT 77411 37 100.0 41 ..................................... TTTTTGTTTATCACCTTACAAGAGTATAATCCATCTTTAGA 77333 37 100.0 40 ..................................... ATATATATTTAATCTTTAAAGATTTAATGTATAAACCAAA 77256 37 100.0 41 ..................................... CTATATGAATACATATAATAGAGAGGGAATACAATTTACAA 77178 37 100.0 36 ..................................... TTCGGTGTAAGAACTTTGGAGTATTTATGTATTATG 77105 37 100.0 36 ..................................... TACAGACAACTTAATAAAAAATATCAGGGAAACCAA 77032 37 100.0 36 ..................................... TTATTAACTCAAGGGACTACATTTATTCCACTAGGT 76959 37 100.0 35 ..................................... AGGAGATGCATTTTTCTGAATGAATGCGCTATAAG 76887 37 100.0 39 ..................................... GAATCTCTACTGACACCATAATTCTGTTTAACATCTAAA 76811 37 100.0 39 ..................................... GATAGCAAGGAACGCTGAAACCCCTATTATTGCGTAAAA 76735 37 100.0 39 ..................................... TATTTACTTTAGGTGACGGTGTAGGAGTAGTATCCAGAA 76659 37 100.0 36 ..................................... AATACTATATCTAAAAGCAAAGTCTTTATATTCAGA 76586 37 100.0 35 ..................................... ACTACCTAGTATATTTTTACACCGGAAAGTGAAAC 76514 37 100.0 33 ..................................... AGACATCTAATCCCCTAAAATCAATTTTCTCTA 76444 37 100.0 34 ..................................... GGAATGAGTAAAGTTGATAAATCTTTAACTACTT 76373 37 100.0 37 ..................................... GATAGGGCAATTGCTTACTTTACTTTGGTTACTTCAA 76299 37 100.0 40 ..................................... TAGTTAATCTACGCTCAAAACCACTCAAGTCAAGCTTAAA 76222 37 100.0 36 ..................................... TGCCATTATTGGTGTAGTCCTCGTGATAATCTCAGG 76149 37 100.0 38 ..................................... ATGGCAATGGCTGCTATGGGAAGCAAAGCTTACTGAAG 76074 37 100.0 34 ..................................... AACCATAAGCCTAAACAGCGAGATATTTATCTTA 76003 37 100.0 41 ..................................... TGGTAGTAAGTCCAAACAACCAAACTGAGAAGCATACTCGA 75925 37 100.0 49 ..................................... AGAAGCTATCGGCGCCGTGCAAGTCGGCGCCGTGCAAGTCGGCGCTTTC 75839 37 100.0 34 ..................................... AGACATATACAAAGAGATAAGAGAAGTAATCAGA 75768 37 100.0 35 ..................................... GCAAGTTTGAAAAAACACCTAAAGGCAAGGCGAAT 75696 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 32 37 100.0 38 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : CTCAATTTTCTTCGCTTAACAGGGCGCCTTACATAGTGCAAATAGGTAAAATATAGACTTTTGTCTTTTATGATGCTGAGTAACAAATGTTATGCTGAGGAACGTAAACAAAGTTTTCCCGAAGGATAGTTTTCCCGCTTTCTTAGCATCTTAAAGATTGGAGCCTGTTTAAAAGTAAAGTTTTAACTCATTTGCACTACATATATAATTATCGATAGGGATGTGGTAAAACCATATCCCTATCTACGTATTTTGACTTTTCAACTTGGTATCATGCGCGGAGGGGTAGGTGTGGAAAAAGAGGTTCTAGCAAAAATGGCTGTATCCCAGTCCCCACAAGCGTTTGAAGAATTAACAAAACAAAACCACCCGCGCACCTTACACAGCAAGCGTTTCAGCGATTTTTACCTTGCACAACCACCATTTCTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTAAATATATCAAGGCTTTCAGGCGCCCGCT # Right flank : GCGGTAAGTCCTTGAAGTCCTTAGAAATCCATCGATTGGAATTATTATTTGTAAGTCGAAAAATAAAACAATTGTAGAGTATGCGCTTAGAGAGTCTAATAAACCAATTGGTGTAGCAACTTATCAAATAGTTTCTACTGTCCCGCAAGAGCTCAAAAAGAAACTTCCCGCTCCCGAACAAGTTTCTAAGCTATTAGAGGGAATCGAGTAAAAGTGATTAGGACTTACGCAAATAAACCCGGTTTCTAATGCTCTCATCTGTTAAGCTAGTAGTTATTGTTATTAACACCTCTTCGGAGGGTGTTTAATACATTTAAAATCTAAGAATTTTAAGCCAAATGCCTCACAGTTTAGTTCTCAACCTACTACCTCAGTCAAGCATCTATCCGCAATTTTTAACTGGTAGACATTATCATGCTTTATTTCTTAACCTTGTTAGTTCGGTAGATAAGAGTTTAGGCGATATCCTTCATGATACAACCACAGATAAAGCTTTTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 93363-92294 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCD01000019.1 Calothrix sp. HK-06 NIES-2101_Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 93362 37 100.0 33 ..................................... ATTAGAAGCAAGCTTCCAGAGGGTGAAGCTTGA 93292 37 100.0 37 ..................................... TACAATTTCTACGCCACTGTATCCATCCCAGGCTATT 93218 37 100.0 43 ..................................... AGCAGTTAAACCTTGAGCAAATAATAATCCACTGGGGTTAATG 93138 37 100.0 42 ..................................... AGCCTACTCACGGATTTATCAAAGTGCTTCTAACTTATTAAG 93059 37 100.0 35 ..................................... AACATCAGACGCGCGTGACAAAATATGCGCGTCAA 92987 37 100.0 34 ..................................... TATTCCGAACGGGGTGGAAGGATACAAGGCAAAG 92916 37 100.0 34 ..................................... AGATTCACCTTCTATAGCGGATGATAACGATGAA 92845 37 100.0 35 ..................................... GCTAAACTCGCTCTAAGAGCTAAAAGAAAAGTATC 92773 37 100.0 35 ..................................... GTGGTGTGTGGATTTTATGATTACCAATGGCAAAC 92701 37 100.0 35 ..................................... TATTTTCTTTATAAACTTTAATCCTTTTACATATG 92629 37 100.0 38 ..................................... ATAGGAGGTAGCGCATGGAATTACAAGAACTAGTTATT 92554 37 100.0 35 ..................................... GGCGCCGAGGCTAATATCAAACAGTGGGGTGAACA 92482 37 100.0 36 ..................................... AACACTTGGTAGAGTGCAAGCGGTACGAATTAGGGT 92409 37 100.0 41 ..................................... GTATTAGACTTATTGGTGGACATGATAAAAACTTTGCTAAT 92331 37 91.9 0 ..................................GGA | A [92296] ========== ====== ====== ====== ===================================== =========================================== ================== 15 37 99.5 37 ATTACAATTTCATTTACTCCCTAATAGGGATTGAAAC # Left flank : CCCTGCCTGTCACATATATTAAGAGGGCGGGGCAAGAGAAAGCCACCCCACAAGAAAATTTTAGCTCATCAACAAAAATCATCTAGCATATATATAGTTAAAACAATTTAAAACTGTCATTCTGAACGTAGTGAAGAATCTCCAAGCCAATCAGCTTAACGAAATGTGGCTCAATATAACAGAAATCTATCTATATTCTACCCGTTCACAGTAGAAGCTGTCAGTACATGAATATTACTTTTCCTACGTATTTTTGGTCTTAAACTTGGTATCATGCGCGGATGGGTAGGTGTGGAAAAAGAGGCGTTGGCGAAAATGGCTGTATCCAAGTCCCCATAAGCATTTGCGGAATAGTTAGATAAAAAGCATCCGCGCACCTTACCCAGAGCGGCTTTCAGCGATTTTGTCCTTGCACAATCCACATTTCTCATGCTACAATTGACCCATCCGCGCAACCGCACCTTGAAAACTAAATATATCAACGCTTTCAGGCGCCCGCT # Right flank : TATTTGAAAAGTCTAATAAAGTATAAAAAGTCCCAAGTGAATGAAGCGGAACGAAGAATCTGAGTTCCACACGTATACTGAGATGCTGAACGCAGTGAAGCATGACACGAAAAGACACTTTTTAAACAGTCTCTTAAAGCTTACTCTATAAGCAGTCTAGAGGAGGTATCAGAAAAAATTTAATTTTTGGATTTGGAACGGGCAAGGATGCCCATTCCACATTCTGTTAGAACTTATTTTTTGGAATTGCTTTACTTTCTAATGGAAATTTAAGGTTTCAACTTCTTGTATTGTTAACGAAAGAATTTGTGCAACTTGTTCAACACTCATCCCTGTTTGTAGTAGTTGAGGTGCTGCGTTTAATCTTGCTTGCCGTTCAGCATTAGCGCGTTGTCGTTCGCTATTAGCACGTTGCTGTTCAGCATCCGCACGTTGTTGTTCAGCATCCGCACGTTGTTGTTCAGCATCCGCACGTTGTTGTTCGGCATCAGCGCGTTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCATTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //