Array 1 13546-13049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHW010000041.1 Phocaeicola dorei strain 1001302B_160321_F1 NODE_41_length_17908_cov_30.1315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 13545 33 100.0 33 ................................. TTGTAAGTTGCTTGATATGCTTGGCTATGGTTC 13479 33 97.0 33 T................................ GAACATTGTTGGTTTGTTACGCTAACCTATGAT 13413 33 100.0 31 ................................. CTCTATTATCATTTTTTTTAAGGTTAGGAAA 13349 33 100.0 34 ................................. GCCATGATATTTACTATATTTGTTTCTTCCTGGC 13282 33 100.0 33 ................................. ACCCACATGTGATTGTTTTCAAAACCATAGTCA 13216 33 100.0 34 ................................. CTCCAGTACCATGTTATGTACCTAAGGTATAGGA 13149 33 97.0 33 T................................ ATCAATGGCCCAGTATTCGGCAATATCGAAGAT 13083 33 81.8 0 G..........G.......A.A.......G.G. | AA [13064] ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.0 33 AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Left flank : GATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAG # Right flank : ATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Alternate repeat : TGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.80,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 37414-39478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHW010000013.1 Phocaeicola dorei strain 1001302B_160321_F1 NODE_13_length_166435_cov_40.9732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 37414 47 100.0 30 ............................................... TCTTCTCATATTCTATACCTTTCTTAATGA 37491 47 100.0 29 ............................................... TACGAGTACCAATAATATTACCAACACCT 37567 47 100.0 30 ............................................... CCATAGATGCAAGAGAACGACCAATGTCAG 37644 47 100.0 29 ............................................... TCCCCATTTCCAGTGGGGCGAATGTCTTG 37720 47 100.0 29 ............................................... CTTCTGATTGGTTTACTCGTACTGTTCCG T [37752] 37797 47 100.0 30 ............................................... CTTCTAATGCAGGTAAGGCTGCCATTACTA T [37829] 37875 47 100.0 30 ............................................... AATGGTTTTATGCACATTTCCTTTGGTTCT T [37907] 37953 47 100.0 30 ............................................... TAAAAGGAGACAAATTATCACCGATGAGAG T [37985] 38031 47 100.0 30 ............................................... CTATCCAAGGCTAAGCATAAAACTACTAAA T [38063] 38109 47 100.0 30 ............................................... CTTATGCGTATAATGTAGATTATTGGGATG T [38141] 38187 47 100.0 30 ............................................... AAAAAGCCAAGAGAAGCCCTGGATCTCGGT T [38219] 38265 47 100.0 29 ............................................... TGTTTATATCGCTAACGGGTATGCTGATG T [38297] 38342 47 100.0 30 ............................................... TATAGTTTAAAACGTCCTCTTTAATTGCTT T [38374] 38420 47 100.0 30 ............................................... GATAGAACCTGCCTTTGCGCACCTTCGTGC T [38452] 38498 47 100.0 30 ............................................... TCGCCATTTCGCATCCTTCGGCTGGAACAT T [38530] 38576 47 100.0 30 ............................................... TTATCAATCACTTGGCGACGATTACGCGGA T [38608] 38654 47 100.0 30 ............................................... TGTAAGCCTGTACAGCCATTCCAAAAGATA T [38686] 38732 47 100.0 29 ............................................... CCAACTCTTCGGTAGTCAATCCTGCTGGT T [38764] 38809 47 100.0 30 ............................................... TATTTCTTCCCATGATTATTCCTCCAAAGA T [38841] 38887 47 100.0 30 ............................................... AGTAGTGTTACGAGGACCGTAATCATTACG T [38919] 38965 47 100.0 30 ............................................... TACAGGAGTGTGAGAGAGAAGAGGAAATGA T [38997] 39043 47 100.0 30 ............................................... ACCTTATTCAAAGTTATATTATGACTACCG T [39075] 39121 47 100.0 29 ............................................... CATATTGGAAATTCTCATTTTCCAATCTA T [39153] 39198 47 100.0 29 ............................................... TCGGGTTTTTGGTTACTTTATGACCTGCA T [39230] 39275 47 100.0 30 ............................................... ACTGCTTGTACATGAATACTTGTTGCTCCC T [39307] 39353 47 100.0 30 ............................................... CTTCGTCCTTGTGTATATGGATTTGAAATG T [39385] 39431 47 100.0 0 ............................................... | T [39463] ========== ====== ====== ====== =============================================== ============================== ================== 27 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : TGCCGGGTATGCGGCTTCGCATTTCAGGAAAGCTTCGCCCGGACTGCTCCTTGGGGTCGTCTTGGCCTATCAGCTTGTCGGGATGCTGGGAGAATGGGCGACGAAAGGAGATTCCTGGCTTGCCGCACAGGATTTCCGGATTGGTATTCCGGGCATGCTGCTTCAGATATTCGGGAGCTGGCTATTCATTAACCGCATCATTCGTAAGTAATACCATTCCTATTGATTTTTGAATGAAAATAATAAACAAGGAGAGGAAAAGGTCTTTTCCTGTTCCTTTGCAACCTCAAATCGGCAATGGATAAGTAGCCATTATTCTCTTAACTCCTGCTGAACAGGTCAAAACCCCTCAATGGATGAATATAGAGTAAACCTGCATATCTCCCTTTATTTCCAACAGTTTGCATTATTCCTGCGAAATCCATCCGTATGTGAGCGAGTTTTGTTATCTTTGAACCATTGGAAACAACTCCATTCTTTTATAAATTCAAGTTTGTACC # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 90635-90359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHW010000015.1 Phocaeicola dorei strain 1001302B_160321_F1 NODE_15_length_150922_cov_31.9761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 90634 47 100.0 30 ............................................... TATGAACCCGATCTGGGGGATTCTTGGGTA 90557 47 100.0 29 ............................................... CGCTTCATTGTGGGGAGTTTACTTTAATA 90481 47 100.0 30 ............................................... AATAGAGTTTACAATTACGAGAATGAAGTA 90404 46 72.3 0 ....................A.T........C-..TG..CT.TTCCA | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 93.1 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : TCGCTCTTTTTCAGGTAGAACGACACCTTTACATTTGCCTGATTCATAACCAATTCCTTTGTTTGCAAAATTATTATATGCAGAGCAAATGAACGGCATGAAAAATATAGCGGAACGTAGAATAAGACCCCTCGGCCTGCAAACAAAGCCTGTATTTTTTTCTGATACGGAAAAATATGACTAAGTTTGCGTCAGCAGACATGGAAAAAACAGCGTTCTTTGCGGTGGTAAACGGGGTAATCAATGAAAGACGAAAGCTTGTTTTTCAAGCCTCTTTTTTTATCCCGAAAAGGCAACGGATAAGTAGTGATTTGTCCTCCTAACTTCACCTAAAACTTGCTAAAAGCCCCCTGCGGAAGAATGTGGTACAAAACGACATATCCCTTTTGCTATCAAACACTTTACATTATTTTCTCCAAAGTTATCCGTATGTGAGCGAGTTTTTTTATCTTTGAACCATTGGAAACAACCATCTATTAGTACAATGGCGGTAGTTATAA # Right flank : CCACGCCATTCAGCCGGTCCTTCTACATCAAAATGTATCAAATCATTAGCCAGCGGACAACGTCTGCCATCTTTATCCATCACTTCCACTTGAAGCAATACCATATCAGCTCCATCCGCTTTCCAGCCTTTAGGACTTTGAATCACACTGAGTTTAATCTGTTCCGGCTTGCCGGCAGTCTGCAATTCAGCGCGACAACATTCTTTTCCATTCTTATCATACCCTACAGCTTCCAACTTGCCCGGAACAAATGCCACATCTTTGAAAGTATACAAGAAATGATAATCTCTTTGACCGTTTCCTAAAGATTTACCATTCAGGAACAATTCCACTTTTTCAGCACTGGATACCACATAAACAGGTTTCACCACATCTTCTTTATAGTTCCAATGACCAACGATATGAATACGGGGATTCTCTATATCCACCCATCCGTCCCACATCACCTGATGTGCATAGAAAGGATCTTTAGGGATACGCATGGCATCTGTCACACCACT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.39%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //