Array 1 283935-284483 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKE01000001.1 Listeria monocytogenes strain FSL L7-0218 NODE_1_length_1461179_cov_46.426065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 283935 29 100.0 35 ............................. TTATACTGTCGCGCGTTATAATTAAATTTAAAATC 283999 29 100.0 36 ............................. AAGATTGGATCTTTATCTGTTGAAAATATCGATCGC 284064 29 96.6 36 ..............A.............. ATACTTCAAATTCGTTTCTTAATATCGAAATTTGTT 284129 29 96.6 38 ..............A.............. GCGCTTGTAGTTGAAACCGATAGAAGACAAGCACTTAA 284196 29 100.0 35 ............................. TGTTGAGTGCTTCAACCAAGTACAACGCACGATAA 284260 29 100.0 36 ............................. TGAAACTATCCGTTTCTTTGGTCTTCACTTGCCCCG 284325 29 100.0 36 ............................. TGTCGATCTTGCGCAGTTAAGGTAAATGCTGGTTCT 284390 29 86.2 36 A......A......A..........G... TCGTAATCTCCTTGTTCTCTTGTATTGTCTATACCG 284455 29 79.3 0 T.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGGCGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAATAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 301384-303800 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKE01000001.1 Listeria monocytogenes strain FSL L7-0218 NODE_1_length_1461179_cov_46.426065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 301384 29 100.0 35 ............................. AATTTATTTGCAATATCAACCAGTTTCATTTCTCC 301448 29 100.0 35 ............................. GTGTTTGTCGTTGTCAAATCTCTTGTTTCCGCCCC 301512 29 100.0 36 ............................. CACAGTTGGTATGATGCTAATCTGTCTAAAGATTGC 301577 29 100.0 35 ............................. GGAACTAAATTCATTTGATCTTTGATTGCTTCTTT 301641 29 100.0 37 ............................. CTTGTTGATAATGTAAAAATGATACAAGTGTCATGTC 301707 29 100.0 35 ............................. AGGACTACCGATTATCGGTCGGTTGCTTTGCCTAC 301771 29 100.0 36 ............................. AAATTTTCCTCGTCGAATATATCCATCGCCCATATA 301836 29 100.0 37 ............................. CCTGAAACATAACAATACTGATCTAGAATTTTAGAGT 301902 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 301965 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 302030 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTATCACTGCCGAA 302094 29 100.0 37 ............................. ATGAATGGAGAGAAAAAGTAAAAGTTATTTTGAGGAA 302160 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 302224 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 302287 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 302352 29 100.0 36 ............................. TCATTTGCAGTCCTGATGAGGATAACGGTATATCAA 302417 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 302482 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 302546 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 302609 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 302675 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 302739 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 302804 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 302867 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 302933 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 302998 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 303063 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 303127 29 96.6 36 ....................T........ CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 303192 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 303256 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 303319 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 303384 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 303450 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 303515 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 303579 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 303642 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 303705 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 303771 29 93.1 0 .......................A....C | C [303794] ========== ====== ====== ====== ============================= ===================================== ================== 38 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //