Array 1 11303-12615 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQVC01000371.1 Escherichia coli strain GN02690 GCID_ECOLID_00106_NODE_49.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11303 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 11364 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 11425 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 11486 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 11547 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 11608 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 11669 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 11730 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 11791 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 11852 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 11913 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 11975 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 12036 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 12098 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 12159 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 12220 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 12281 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 12342 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 12403 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 12464 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 12525 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 12587 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26845-25962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQVC01000373.1 Escherichia coli strain GN02690 GCID_ECOLID_00106_NODE_50.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26844 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 26783 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 26722 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 26661 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 26600 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 26539 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 26478 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 26417 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 26356 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 26295 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 26234 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 26173 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 26112 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 26050 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 25989 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //