Array 1 1513945-1515113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008872.2 Pseudomonas aeruginosa strain X78812 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1513945 28 96.4 32 .............C.............. ACTTCGGCGGCAAATCCAAGCTCGCCGCCGCG 1514005 28 96.4 32 .............C.............. TGTCCGACAACCCGCATAGCATCCCTGAGCAA 1514065 28 96.4 32 .............C.............. AATTCGCGGTCCTGCAGCTCACGCGCCTGGGC 1514125 28 96.4 32 .............C.............. AAAATCTGATGCCGACCATCGTGATTTCGAAC 1514185 28 96.4 32 .............C.............. ACATGGGAATGCTCTCCTGGCACGAAGAAACG 1514245 28 96.4 32 .............C.............. GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 1514305 28 96.4 32 .............C.............. ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 1514365 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 1514425 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1514486 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1514546 28 100.0 32 ............................ ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1514606 28 100.0 32 ............................ AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1514666 28 100.0 32 ............................ TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 1514726 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1514786 28 100.0 32 ............................ ATCAGGTACAGCACCAGGGCACCGAAGACGTT 1514846 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1514906 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1514966 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 1515026 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1515086 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2809126-2809573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008872.2 Pseudomonas aeruginosa strain X78812 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2809126 28 100.0 32 ............................ GCGGGGTGGTGGTGGAAGTCGCGGGGTTTAAA 2809186 28 100.0 32 ............................ ACACAGAATAAAAGTGAAATATCCGAGATCAA 2809246 28 100.0 32 ............................ TGCTTCAACCCCGCAGGTTGCCCGCAGCGATC 2809306 28 100.0 32 ............................ TGGAGCAATCCCGCCCGGTGGCGACTACTGGA 2809366 28 100.0 32 ............................ AGAACCTCGTACGGCCACCTTCGGACACCAGC 2809426 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2809486 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2809546 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGGTGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGAGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCATTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2819746-2818098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008872.2 Pseudomonas aeruginosa strain X78812 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2819745 28 100.0 32 ............................ ACACCAGCAAGGCCCCCACCGCGCACGACCTG 2819685 28 100.0 32 ............................ AGGCCAGTGCCGCCACCGGTACCACCGCCCTC 2819625 28 100.0 32 ............................ TCGACGAACTCTGGCGGCGCTGGCCGAAGGGC 2819565 28 100.0 32 ............................ AGGAAGTGGAAATTCCATCGTTCATTTCGCAG 2819505 28 100.0 32 ............................ TAGAGCGATCTCATAGGCTAGCCGTCGTTCTG 2819445 28 100.0 32 ............................ ATTACTCAAGCACCCGGAAGCAGTAGCCGACC 2819385 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 2819325 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 2819265 28 100.0 32 ............................ ATGCAGAGGGTAGCTACTGCACGAAATTTCGA 2819205 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 2819145 28 100.0 32 ............................ AGGTGCTCATCATCGAGCACGCGGGAAATGTC 2819085 28 100.0 32 ............................ ATCCCCACCGTCTCCACCATCGCCCGGATCAG 2819025 28 100.0 32 ............................ TGGGCATCAAGGTCGAGCGCAACCTCGAACAA 2818965 28 100.0 32 ............................ TTCGTCTGCGCCCTGGTGGTCATTCCTCTCAG 2818905 28 100.0 32 ............................ AGAAGCCGTAACCGGCAGCAGCGCGGGCTTCG 2818845 28 100.0 32 ............................ AGCAGCCTGGACCTGGTTCGGCCCGTCCAGGC 2818785 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2818725 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 2818665 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 2818605 28 100.0 32 ............................ ATGAGCTGCCCCCTTATGCGCCAGTGCCGGTG 2818545 28 100.0 32 ............................ TGTGATCGCCGCTACCTCCATCATAGAGAAGC 2818485 28 100.0 32 ............................ AAGTTCCGGGAAGCGGTCGAGCCGAAAGCTAT 2818425 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 2818365 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2818305 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2818245 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2818185 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2818125 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //