Array 1 218489-216530 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPZ01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 576 NODE_2_length_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218488 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218427 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218366 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218305 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218243 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218182 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218121 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 218060 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217999 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217938 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217877 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217816 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217755 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217694 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217633 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217572 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217511 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217450 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217389 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217328 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217270 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217209 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217148 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217087 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 217026 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216965 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216904 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216843 29 100.0 11 ............................. CGGCCAGCCAT Deletion [216804] 216803 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 216742 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 216681 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216620 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216559 29 93.1 0 A...........T................ | A [216532] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236387-234771 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPZ01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 576 NODE_2_length_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236386 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236324 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236263 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 236202 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 236141 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 236080 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 236019 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 235958 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 235897 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235836 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235775 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235714 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235653 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235592 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235531 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235470 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235409 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235348 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235286 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235225 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 235164 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 235103 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 235042 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 234981 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 234920 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 234859 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234798 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //