Array 1 707-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWCV01000096.1 Streptococcus mitis strain 1111_SMIT 306_730_9448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 706 36 100.0 30 .................................... TCTTACCAAGCTTTAGTTCGTATCTGTCAT 640 36 100.0 30 .................................... ACTTCATCGCTTCGGCCATGTCAACGGTCT 574 36 100.0 30 .................................... CTGCGTTATTTTGCAAGCGTTCAGCAAGAC 508 36 100.0 30 .................................... AACAACGCTAACAATGTAAGCTATGCTGAT 442 36 100.0 30 .................................... CGATTGAAGACCAGTACCTTGTTATCTCAG 376 36 100.0 30 .................................... CGTCTAAGACGTATCATGACGGCCTCTACA 310 36 100.0 30 .................................... ATCGAAGAATTTGAAAAATGGTACAATCCG 244 36 100.0 30 .................................... TGTTCCTTCTGATAGTAGGCATCACGATAC 178 36 100.0 30 .................................... AGACCAACCACTATGAGTTTTTCAGGGATG 112 36 94.4 0 .................................CC. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TACCTGCATTCAGCAATTCCTTG # Right flank : CATATTAAAAGCTACTCATTGAACTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTGGGGTGTTTTATTATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16722-17617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWCV01000039.1 Streptococcus mitis strain 1111_SMIT 113_17641_290657, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 16722 36 100.0 30 .................................... ATGGAGCTAGTTTGGTTCTTAAAGATGTGT 16788 36 100.0 32 .................................... TTCTTTTTTCATTTTAAACCTCCATTGGCATA 16856 36 100.0 30 .................................... CGCGAACCTTCTCTAAATACGACTTCAACT 16922 36 100.0 30 .................................... CCAACCTTGAACATCTTTAACCTTTAGTTT 16988 36 100.0 30 .................................... TGTCAGTTCTTTTTCTGTAAAGTTTCTTAC 17054 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 17120 36 100.0 30 .................................... TCCATTTTTATTCAATTTTCCAGCCAACAC 17186 36 100.0 30 .................................... TCTGAGTTAAAACTCATGTAGCGAGTTCAT 17252 36 100.0 30 .................................... AAACGCTACAAGGGAAAACCCAAGGAGATA 17318 36 100.0 30 .................................... TAATAACCCGTTAAAAACGTGCCATCACAA 17384 36 100.0 30 .................................... CTACAGAAAGGATAAATATGGCAGAAGCAA 17450 36 100.0 30 .................................... ACACTATCAAAAATAATTCAATCAGCATAT 17516 36 100.0 30 .................................... CTATAACAGTTTCTGGAGATTTTGGACATT 17582 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 14 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGTCCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CTTTCTTACCTGCATTCAGCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 523-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWCV01000105.1 Streptococcus mitis strain 1111_SMIT 331_546_6871, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 522 36 100.0 30 .................................... ACAAATCAGTATTATGAAAAAATTAGGAAG 456 36 100.0 30 .................................... CGTATTTGCTTAAACGAGTATGGACCAAAG 390 36 100.0 30 .................................... ATTTAGCTTTTGTAGCTTCAAGCTTCTTAC 324 36 100.0 30 .................................... ATCAATGCTTGTAGAAGTTGAACCCCTGCT 258 36 100.0 30 .................................... TAGAAGTTTGGTAGTGGCTATGGAAGACTT 192 36 100.0 30 .................................... CTAGAGAAAGCTATAAAGCTATACATAATA 126 36 100.0 30 .................................... AGTGGCAGTGGGACATTCGTCAACAGGTCG 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TACCTGCATTCAGCAATTCCTTG # Right flank : CCTTTCTTACCTGCATTCAGCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //