Array 1 172477-174092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZON01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172477 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 172538 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 172599 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 172660 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 172721 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 172782 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 172843 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 172904 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 172965 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 173026 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 173087 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 173148 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 173209 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 173270 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 173332 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 173393 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 173454 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 173515 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 173576 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 173638 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 173699 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173760 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173821 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173882 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173943 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 174004 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 174065 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190600-192336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZON01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190600 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 190661 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 190722 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190783 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190844 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190905 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190966 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 191027 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 191088 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 191149 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 191210 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 191271 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 191332 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 191393 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 191454 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 191515 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 191576 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191637 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191698 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191759 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191820 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191881 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191942 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 192003 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 192064 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 192125 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 192186 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192247 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192308 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGTGTCCAGCGGACATCCTCAGCCGGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 192641-193219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZON01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192641 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192702 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192763 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192824 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192885 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192946 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 193007 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 193068 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 193129 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 193190 29 93.1 0 A...........T................ | A [193216] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGCCATGTTTGATTGTGCGGATTGACCAAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //